Detailed information NTG0485346

Bioinformatically predicted

Overview

• Name: chiS
• Type: Regulator
• Locus tag: IC628_RS12975
• Genome accession: NZ_CP061861
• Coordinates: 2681982..2685374 (+)
• Length: 1130 a.a.
• NCBI ID: WP_086957548.1
• Uniprot ID: L7NKG1
• Organism: Photobacterium damselae subsp. piscicida strain AS-16-0555-7
• Function: chitin sensor (predicted from homology) Competence regulation

Genomic Context

Location: 2676982..2690374

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IC628_RS12960 (IC628_12960)	hemL	2677695..2678987 (+)	1293	WP_191169362.1	glutamate-1-semialdehyde 2,1-aminomutase	-
IC628_RS12965 (IC628_12965)	-	2679361..2680449 (+)	1089	WP_086957549.1	AI-2E family transporter	-
IC628_RS12970 (IC628_12970)	rsmC	2680649..2681668 (+)	1020	WP_191169363.1	16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC	-
IC628_RS12975 (IC628_12975)	chiS	2681982..2685374 (+)	3393	WP_086957548.1	response regulator	Regulator
IC628_RS12980 (IC628_12980)	-	2686075..2687751 (+)	1677	WP_086957547.1	ABC transporter substrate-binding protein	-
IC628_RS12985 (IC628_12985)	-	2687898..2688884 (+)	987	WP_044176762.1	ABC transporter permease	-
IC628_RS12990 (IC628_12990)	-	2688887..2689912 (+)	1026	WP_044176763.1	ABC transporter permease	-

Sequence

Protein

• Length: 1130 a.a.
• Molecular weight: 127207.32 Da
• Isoelectric Point: 6.6791

>NTDB_id=485346 IC628_RS12975 WP_086957548.1 2681982..2685374(+) (chiS) [Photobacterium damselae subsp. piscicida strain AS-16-0555-7]
MQTKQRFKRLQHTLMLAFLVLSITPLTLSALYFLNSHSKDLAEQSTSHLASLLENKKKQLNQFFAAKESEVQSFARSELA
NASGGRFYGLVGAYHQLGNINNLLNGLTRDQYFKEILTAKGQKSTTNSASYVGQERYRLMYKRYNWAFDEYLKRSDFSDI
LLVDLKGNVVYSAKKPQYFALNLASGKGALKGLQPTFQAISTQAQQLKQDQEVVPVAFADFNLGGNNQSEQAWFAAPIIQ
QGYLHSYVFFQLDINKIATLLPDKPQNGQTVQTLLVGQDHHMRLPNSGDLPQQLISPAINQALAGKTGVGSLLNYNNIAV
LSAFTPIKIFNHTWALVVELPEKEAFARIHQLEKIFFAAMLTAIVLVILAALWLSNSITAPLLRLTWASERVSAGDLEQK
IEGTERKDEIGRLATSFARMQCSIREKMSLISKQNQELEKNIHVIKQQNDDLQTADKLKDEFLATTSHELRTPLHGMIGI
AESLLAGANGPMQGAQRRQLEMLINSGQRLTNLVDDLLDYHKMRYGDLDIDKHAVDLASAVRLVLELSGHLLGTKPVRII
NQIPADLPLVQADEQRLEQVLYNLVGNAIKYTSEGKIVLSATVLENQVRIQVVDTGQGIPAEQLEHIFEPLVQANTNHAN
YRQGAGLGLTISRQLLELMGGRLYVSSQPMVGTTFSFTLNIASDEQIRQSHDHGKIHHFQAPLCDATPIEMANLPENLNG
ELLLVVDDEPVNLQILNNFLRLEGYRVLTAESGKQALELVQSHKPALILLDIMMPEMSGYEVCSQLRQQYTPLELPIMML
SALGQVKDRVKGFECGANDYLTKPFNKEELTARIKAHLQAGKTEFEREKNRQLAQEIHQRKQVELSLLETQTRLLGLLES
TTEAILCIQNSGRIRYANDAAAKLFKRTPEQLERHSIDELLLTHLPDELQNNHHYSGSLCFKIGEQQQNLATDILNLPEE
SGLKQMFIFGNSGPSPQQRVQMLEEAIDVLSSYAFDGDKDNLQQLRELGGEFTRLADKLGNDAPNKQDILRELLVDAMRT
TLEVWEQDTKKTKFDLAEESGLWRVYLDRSTLQTRTLDKYLHVETLPKTPRWRTVISTIDYVLDKGSAQNIQHQQLSQMR
DKLQNLLRAS

Nucleotide

• Length: 3393 bp

>NTDB_id=485346 IC628_RS12975 WP_086957548.1 2681982..2685374(+) (chiS) [Photobacterium damselae subsp. piscicida strain AS-16-0555-7]
ATGCAAACAAAACAACGATTTAAACGTCTTCAGCATACATTAATGCTGGCTTTTCTTGTTCTTAGTATTACGCCATTAAC
TCTCTCCGCACTGTATTTCCTCAACTCACACTCCAAGGATTTGGCAGAGCAAAGCACATCGCATTTGGCGTCTCTTCTTG
AGAATAAGAAAAAACAACTAAACCAATTTTTTGCGGCTAAAGAGTCTGAGGTGCAAAGTTTTGCTCGATCAGAGCTTGCT
AATGCCAGTGGTGGCCGCTTCTATGGGTTAGTAGGGGCTTACCATCAATTAGGTAATATCAATAACCTGTTAAATGGCCT
GACGCGAGACCAGTATTTTAAAGAGATTCTCACGGCAAAAGGGCAAAAAAGTACCACCAACAGTGCCAGTTATGTCGGCC
AGGAGCGCTATCGTTTAATGTATAAGCGTTATAACTGGGCATTTGATGAATATCTTAAGCGCTCAGATTTTAGTGATATC
TTATTGGTTGATTTAAAAGGTAATGTGGTCTATTCCGCGAAAAAACCACAGTACTTTGCTTTAAATCTTGCTTCAGGCAA
GGGAGCCTTAAAAGGGTTACAACCAACTTTCCAAGCCATTAGCACTCAAGCTCAACAGCTAAAACAAGACCAAGAAGTCG
TACCCGTTGCTTTTGCCGATTTTAACCTAGGAGGCAATAATCAGTCAGAACAAGCCTGGTTTGCCGCCCCAATCATTCAG
CAAGGGTATTTACACAGCTACGTATTTTTCCAGCTCGATATCAATAAAATCGCAACCTTACTGCCCGATAAACCGCAAAA
TGGGCAAACGGTTCAAACTCTATTAGTAGGCCAAGATCATCACATGCGCTTACCCAATAGTGGAGATTTGCCACAACAAT
TGATCAGCCCAGCCATCAACCAAGCACTTGCAGGCAAAACTGGGGTAGGCAGTTTGCTTAACTACAATAATATTGCCGTA
CTCAGTGCCTTTACTCCGATTAAAATCTTTAACCACACCTGGGCATTGGTAGTTGAATTACCCGAAAAAGAAGCATTTGC
TCGTATTCATCAACTCGAAAAAATCTTTTTTGCAGCCATGCTTACTGCCATCGTATTAGTGATTTTAGCCGCTCTTTGGT
TATCAAACTCAATAACGGCTCCCCTATTACGCTTAACTTGGGCATCTGAGCGAGTCTCAGCAGGCGATCTAGAACAAAAA
ATCGAAGGAACAGAACGTAAAGATGAAATTGGTCGTCTTGCCACTAGCTTTGCTCGAATGCAATGTTCTATTCGGGAAAA
AATGAGTTTAATTAGCAAGCAAAATCAAGAGCTTGAAAAAAACATTCACGTAATCAAACAACAAAATGATGATCTACAAA
CCGCCGACAAACTAAAAGATGAGTTCTTAGCGACGACTTCACATGAGTTGCGAACCCCTCTTCACGGGATGATTGGGATA
GCCGAATCCTTACTTGCTGGAGCAAATGGACCAATGCAAGGAGCCCAACGCCGTCAATTGGAAATGTTGATCAACAGTGG
TCAGCGTCTAACGAACTTAGTTGATGATCTACTCGATTACCACAAAATGCGTTATGGCGATCTCGATATCGATAAACATG
CGGTCGATCTTGCCAGCGCTGTTCGGTTAGTTCTTGAATTATCTGGCCATTTATTGGGAACCAAACCGGTTCGAATCATT
AACCAAATACCCGCTGATTTACCTTTAGTTCAAGCCGATGAACAACGCCTAGAGCAAGTGCTGTATAACTTGGTTGGTAA
TGCAATCAAATATACCTCTGAAGGAAAGATTGTGCTTTCTGCAACAGTATTGGAAAACCAAGTTCGCATTCAAGTGGTTG
ATACAGGACAAGGAATTCCGGCAGAACAACTTGAACATATCTTTGAACCACTGGTACAAGCCAACACCAATCATGCTAAC
TATCGTCAAGGAGCGGGCCTTGGTTTAACCATTAGCCGTCAATTACTGGAGTTAATGGGTGGTCGCCTGTACGTCAGCAG
TCAGCCAATGGTGGGAACCACTTTTAGTTTTACCCTAAACATCGCCTCCGACGAACAAATTCGCCAAAGCCATGATCACG
GTAAAATTCATCACTTCCAAGCTCCATTGTGTGATGCCACTCCGATTGAAATGGCAAATTTACCTGAAAACTTAAATGGT
GAACTACTACTCGTGGTTGATGATGAACCCGTTAATCTTCAGATACTCAATAACTTCCTAAGACTTGAAGGGTATCGAGT
TCTCACAGCAGAAAGCGGAAAACAGGCCCTTGAGTTAGTACAAAGCCACAAACCCGCACTGATTTTACTCGATATTATGA
TGCCAGAAATGAGTGGTTATGAGGTTTGTAGCCAATTGCGCCAACAATATACCCCATTAGAACTACCGATCATGATGCTA
TCTGCATTGGGGCAAGTTAAAGATCGCGTTAAAGGTTTTGAATGCGGCGCCAATGATTACCTAACAAAACCTTTTAATAA
AGAAGAGCTTACCGCACGTATAAAAGCCCATCTTCAAGCGGGAAAAACTGAATTTGAGCGAGAAAAAAATCGTCAATTAG
CTCAAGAAATTCACCAACGTAAGCAAGTTGAGTTAAGTTTACTTGAGACCCAAACTCGATTACTTGGCCTATTAGAATCC
ACCACCGAAGCCATTTTATGTATTCAAAATAGTGGGCGAATTCGTTATGCCAATGACGCTGCGGCTAAATTATTTAAACG
CACTCCAGAGCAATTGGAGCGCCACTCCATCGATGAACTACTGCTAACCCACCTACCTGATGAGTTACAAAATAATCATC
ATTACAGTGGTTCACTGTGTTTCAAAATTGGCGAACAACAACAAAACCTTGCTACCGATATCCTCAATTTGCCAGAAGAG
TCTGGACTTAAGCAGATGTTTATCTTCGGCAATAGCGGGCCATCGCCACAGCAACGAGTACAAATGCTTGAAGAAGCTAT
TGATGTTTTATCGAGCTATGCTTTTGATGGTGACAAAGACAACTTACAACAATTGCGTGAGCTAGGTGGAGAATTCACCA
GACTGGCAGACAAATTGGGTAATGATGCCCCTAATAAACAAGATATTTTGCGCGAATTGCTGGTTGATGCCATGCGTACA
ACGCTTGAGGTTTGGGAGCAAGATACGAAAAAAACCAAGTTTGATTTAGCCGAAGAGAGTGGATTATGGCGTGTTTATCT
CGATCGTAGTACGCTACAAACTCGCACCTTAGATAAATATCTCCATGTTGAGACTCTTCCTAAAACGCCACGTTGGCGCA
CGGTTATTAGCACCATAGACTATGTTCTTGATAAAGGCAGTGCTCAAAATATCCAACATCAACAGCTGAGCCAGATGCGA
GATAAATTGCAGAACTTATTACGAGCAAGTTAA

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (724-835)

• His Kinase A (phospho-acceptor) domain (HisKA) (459-524)

• HAMP domain (HAMP) (373-421)

• Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c) (573-680)

3D structure

• AlphaFold DB: L7NKG1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
chiS	Vibrio cholerae strain A1552	58.761	100	0.588