Detailed information NTG0485284

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: I0P59_RS17980
• Genome accession: NZ_CP072787
• Coordinates: 3791246..3792238 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain NC101
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3786246..3797238

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I0P59_RS17960 (I0P59_17960)	ygbM	3786884..3787660 (+)	777	WP_001136915.1	HPr family phosphocarrier protein	-
I0P59_RS17965 (I0P59_17965)	ygbN	3787749..3789113 (+)	1365	WP_000104433.1	GntP family transporter	-
I0P59_RS17970 (I0P59_17970)	-	3789256..3790299 (-)	1044	WP_001161578.1	MBL fold metallo-hydrolase	-
I0P59_RS17975 (I0P59_17975)	-	3790524..3791075 (+)	552	WP_001179443.1	flavodoxin family protein	-
I0P59_RS17980 (I0P59_17980)	rpoS	3791246..3792238 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
I0P59_RS17985 (I0P59_17985)	nlpD	3792301..3793395 (-)	1095	WP_306217602.1	murein hydrolase activator NlpD	-
I0P59_RS17990 (I0P59_17990)	pcm	3793580..3794206 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
I0P59_RS17995 (I0P59_17995)	surE	3794200..3794961 (-)	762	WP_001350156.1	5'/3'-nucleotidase SurE	-
I0P59_RS18000 (I0P59_18000)	truD	3794942..3795991 (-)	1050	WP_000568929.1	tRNA pseudouridine(13) synthase TruD	-
I0P59_RS18005 (I0P59_18005)	ispF	3795988..3796467 (-)	480	WP_001219238.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
I0P59_RS18010 (I0P59_18010)	ispD	3796467..3797177 (-)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=485284 I0P59_RS17980 WP_000081550.1 3791246..3792238(-) (rpoS) [Escherichia coli strain NC101]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=485284 I0P59_RS17980 WP_000081550.1 3791246..3792238(-) (rpoS) [Escherichia coli strain NC101]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715