Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   BAMOH1_RS07255 Genome accession   NZ_CP061853
Coordinates   1406456..1406740 (+) Length   94 a.a.
NCBI ID   WP_024085249.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain MOH1-5b     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1401456..1411740
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAMOH1_RS07235 (BAMOH1_07235) - 1402700..1403608 (+) 909 WP_072177753.1 ketopantoate reductase family protein -
  BAMOH1_RS07240 (BAMOH1_07240) - 1403639..1404871 (-) 1233 WP_007409644.1 aminopeptidase -
  BAMOH1_RS07245 (BAMOH1_07245) - 1404972..1405106 (-) 135 WP_003154559.1 protein YkpC -
  BAMOH1_RS07250 (BAMOH1_07250) mreBH 1405178..1406185 (-) 1008 WP_174747617.1 cell shape-determining protein MreBH -
  BAMOH1_RS07255 (BAMOH1_07255) abrB 1406456..1406740 (+) 285 WP_024085249.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  BAMOH1_RS07260 (BAMOH1_07260) - 1406913..1408217 (+) 1305 WP_014417634.1 ATP-binding protein -
  BAMOH1_RS07265 (BAMOH1_07265) - 1408219..1409046 (+) 828 WP_191389709.1 gamma-glutamylcyclotransferase family protein -
  BAMOH1_RS07270 (BAMOH1_07270) ktrC 1409087..1409752 (+) 666 WP_003154554.1 Ktr system potassium transporter KtrC -
  BAMOH1_RS07275 (BAMOH1_07275) ade 1409901..1411634 (+) 1734 WP_053285007.1 adenine deaminase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10574.41 Da        Isoelectric Point: 5.2271

>NTDB_id=485278 BAMOH1_RS07255 WP_024085249.1 1406456..1406740(+) (abrB) [Bacillus amyloliquefaciens strain MOH1-5b]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGICLMTGEITSENQEYGNGKIILSPEGAK
MLLEEIEEALKDRS

Nucleotide


Download         Length: 285 bp        

>NTDB_id=485278 BAMOH1_RS07255 WP_024085249.1 1406456..1406740(+) (abrB) [Bacillus amyloliquefaciens strain MOH1-5b]
ATGAAATCAATTGGTGTAGTAAGAAAAGTAGACGAACTCGGGCGTATTGTCATGCCGATTGAATTGAGAAGAGCATTGGA
TATCGCTATTAAAGATAGTATTGAATTTTTCGTTGACGGAGACAAAATTGTCTTAAAAAAATACAAGCCGCACGGCATTT
GCTTAATGACGGGGGAAATTACCTCCGAAAATCAGGAGTACGGCAACGGCAAAATTATTTTAAGTCCTGAAGGAGCGAAA
ATGCTGCTTGAGGAAATCGAGGAAGCGTTAAAAGATAGATCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(54-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.435

97.872

0.543