Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   I872_RS05370 Genome accession   NC_021175
Coordinates   1073343..1075562 (-) Length   739 a.a.
NCBI ID   WP_015605130.1    Uniprot ID   A0ABM5NKH7
Organism   Streptococcus cristatus AS 1.3089     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1068343..1080562
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I872_RS05345 (I872_05355) - 1069893..1070252 (-) 360 WP_015605125.1 hypothetical protein -
  I872_RS05350 (I872_05360) - 1070254..1070526 (-) 273 WP_015605126.1 hypothetical protein -
  I872_RS05355 (I872_05365) - 1070977..1071657 (-) 681 WP_015605127.1 DnaD domain-containing protein -
  I872_RS05360 (I872_05370) metA 1071667..1072608 (-) 942 WP_015605128.1 homoserine O-acetyltransferase MetA -
  I872_RS05365 (I872_05375) - 1072709..1073221 (-) 513 WP_015605129.1 adenine phosphoribosyltransferase -
  I872_RS05370 (I872_05380) recJ 1073343..1075562 (-) 2220 WP_015605130.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  I872_RS05375 - 1075668..1076258 (-) 591 Protein_1049 HD domain-containing protein -
  I872_RS05380 (I872_05395) - 1076415..1077551 (+) 1137 WP_015605131.1 phosphoribosyltransferase domain-containing protein -
  I872_RS05385 (I872_05400) - 1077563..1078654 (+) 1092 WP_015605132.1 cysteine protease StiP family protein -
  I872_RS05390 (I872_05405) - 1078843..1080411 (+) 1569 WP_015605133.1 YceG family protein -

Sequence

Protein


Download         Length: 739 a.a.        Molecular weight: 82730.51 Da        Isoelectric Point: 4.4240

>NTDB_id=48521 I872_RS05370 WP_015605130.1 1073343..1075562(-) (recJ) [Streptococcus cristatus AS 1.3089]
MISSKYDWQFATNFTDEKFLKKAKKAGLEPAAASLLYQRGVQTEEALQEFLEPSLDQLHDPYDLHDMERAVERIRAAIEN
YEQILIYGDYDADGMTSASIVKEALEQLGAECQVYLPNRFTDGYGPNSSVYKYFIENQGISLIITVDNGVAGLEAIELAQ
SLGVDVIVTDHHSMPEELPNAYAIVHPEHSGADYPFKHLAGCGVAFKLATALLEEVQVELLDLVAIGTIADMVSLTGENR
ILVKYGLSVLKNTQRVGLQELFKIAGIQPDELDEETVGFQLAPRLNALGRLDDPNPAIELLTGFDDEEARDIALMINQKN
DERKEIVQQIYKEAQTMLDPKRPVQVLAKEGWNPGVLGIVAGRLLEELHQPVIVLNIEDGIAKGSARSIEAVNIFEALDS
HRDLFLAFGGHAGAAGMTLEADKLAELADILTEYILENDLDLTGKTALYLDEELHLPELTLDTLKSFEKLAPFGMDNKKP
LFYLKDFKVDNARTMGAGNSHLKLKISQADASFEVVAFGQGSLATEFAQTKNLELAVSLSVNKWNGQTSLQLMLVDARVD
GVQLFNIRGKNATLPDKVPVLRFTEELPDLTNSRAVVVYDLPDNLQVLKKILQYQDFEAIYFKNEIAKPYYLTGYGTREQ
FAKLYKTIYQFPEFDVRYKLKELAAYLKIDPILLVKMIQIFEELGFVSITEGVMTVNKEAEKKEIDSSHIYQDLKRLVKE
QELMALGTVQEIYDYLMDC

Nucleotide


Download         Length: 2220 bp        

>NTDB_id=48521 I872_RS05370 WP_015605130.1 1073343..1075562(-) (recJ) [Streptococcus cristatus AS 1.3089]
ATGATTAGCTCAAAATATGACTGGCAGTTTGCCACTAATTTTACAGATGAAAAATTTTTAAAAAAGGCTAAGAAAGCTGG
GTTAGAACCCGCAGCCGCCAGTCTTCTTTACCAAAGAGGTGTGCAGACTGAAGAGGCCTTGCAGGAATTTTTGGAGCCTA
GTTTAGACCAGCTTCACGACCCTTATGACCTTCATGATATGGAGCGGGCAGTGGAGCGCATTCGCGCAGCGATTGAGAAC
TACGAACAGATTTTGATCTATGGCGATTATGATGCAGATGGCATGACCTCGGCATCTATTGTCAAGGAAGCCTTGGAGCA
GCTGGGGGCTGAGTGTCAGGTCTATCTGCCCAATCGCTTTACGGATGGCTATGGTCCTAATAGCAGTGTTTACAAGTATT
TTATTGAAAATCAAGGCATCTCGCTCATTATTACAGTGGATAATGGAGTGGCTGGACTTGAAGCTATCGAGCTGGCCCAG
TCTCTCGGCGTCGATGTCATCGTGACGGATCACCACTCCATGCCCGAGGAGCTGCCAAATGCCTATGCGATCGTCCATCC
GGAACATAGCGGAGCGGATTACCCTTTCAAACATCTGGCTGGCTGTGGGGTGGCTTTTAAGCTGGCAACAGCCTTGTTGG
AAGAAGTCCAAGTCGAACTTTTGGACTTAGTTGCCATTGGCACCATTGCCGATATGGTCAGTCTGACGGGGGAAAATCGG
ATCTTAGTCAAATATGGTCTTTCAGTTCTCAAAAATACCCAGCGAGTGGGACTTCAGGAGCTCTTCAAAATCGCTGGTAT
TCAGCCAGATGAACTGGATGAAGAAACAGTTGGTTTCCAGCTTGCCCCTAGACTCAATGCCTTGGGACGGTTGGATGATC
CTAATCCAGCTATTGAGCTTTTGACAGGCTTTGACGACGAAGAAGCTCGTGACATTGCTCTCATGATTAACCAGAAAAAT
GACGAGCGCAAGGAAATCGTCCAGCAGATTTATAAAGAAGCACAAACCATGCTGGACCCTAAGAGACCAGTGCAGGTGTT
GGCCAAGGAAGGCTGGAATCCCGGTGTGCTAGGGATTGTCGCTGGGCGCTTGCTGGAAGAGCTGCATCAGCCAGTTATAG
TGCTCAATATTGAGGATGGAATCGCTAAGGGCAGCGCCCGCAGTATTGAAGCGGTCAATATTTTTGAGGCCTTGGACAGT
CACCGTGATCTCTTTCTAGCCTTTGGTGGGCACGCTGGAGCGGCTGGAATGACTCTTGAAGCAGACAAGCTGGCGGAGCT
TGCTGATATCTTGACAGAGTATATCTTAGAAAATGATTTGGATTTAACTGGCAAAACAGCTCTGTATTTAGATGAGGAGC
TGCATCTGCCAGAACTGACCCTGGATACGCTCAAAAGCTTCGAAAAACTGGCGCCTTTTGGTATGGATAATAAGAAGCCA
CTTTTTTACCTCAAGGACTTTAAAGTGGACAATGCACGGACTATGGGGGCTGGCAATAGCCATCTCAAACTGAAAATTTC
TCAGGCAGATGCATCTTTTGAAGTAGTAGCTTTTGGGCAAGGAAGCCTGGCGACAGAGTTTGCCCAGACTAAGAATCTGG
AGCTGGCTGTCAGCCTCTCTGTCAATAAATGGAATGGACAGACCAGTCTCCAGCTCATGCTGGTAGATGCCCGTGTGGAC
GGCGTTCAGCTTTTCAATATCCGCGGAAAAAATGCGACACTGCCTGACAAGGTTCCAGTCTTGCGTTTCACAGAGGAATT
GCCGGATTTGACAAATAGCAGAGCAGTTGTAGTTTATGACCTGCCAGATAATTTGCAGGTCTTGAAGAAGATTCTTCAGT
ATCAGGATTTTGAAGCTATTTACTTTAAGAATGAAATTGCCAAGCCATACTATCTGACCGGTTATGGTACTCGTGAGCAA
TTTGCTAAACTTTACAAGACAATCTATCAGTTCCCCGAGTTTGATGTTCGCTATAAACTCAAGGAGCTGGCAGCTTACCT
GAAAATTGATCCTATTCTCTTGGTCAAAATGATTCAGATTTTTGAAGAGCTGGGCTTTGTCAGCATCACGGAAGGCGTCA
TGACGGTCAATAAGGAAGCTGAAAAGAAAGAAATTGACAGTAGTCACATTTACCAAGACCTCAAGCGCCTGGTCAAAGAA
CAAGAACTTATGGCTCTGGGCACTGTGCAGGAGATTTACGACTATCTCATGGATTGCTAG

Domains

Predicted by InterProScan.

DHH family (DHH)

(83-228)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(592-733)

RecJ OB domain (RecJ_OB)

(451-556)

DHHA1 domain (DHHA1)

(317-435)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Streptococcus pneumoniae strain D39V

75.474

99.865

0.754
  recJ Bacillus subtilis subsp. subtilis str. 168

38.083

100

0.398

Multiple sequence alignment