Detailed information
Bioinformatically predicted
Overview
| Name | clpC | Type | Regulator |
| Locus tag | BAINH2_RS00570 | Genome accession | NZ_CP061852 |
| Coordinates | 104414..106849 (+) | Length | 811 a.a. |
| NCBI ID | WP_053573807.1 | Uniprot ID | - |
| Organism | Bacillus amyloliquefaciens strain INH2-4b | ||
| Function | degradation of ComK; degradation of DegU (predicted from homology) Competence regulation |
||
Genomic Context
Location: 99414..111849
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BAINH2_RS00555 (BAINH2_00555) | ctsR | 102291..102755 (+) | 465 | WP_003156396.1 | transcriptional regulator CtsR | - |
| BAINH2_RS00560 (BAINH2_00560) | - | 102769..103326 (+) | 558 | WP_053573806.1 | UvrB/UvrC motif-containing protein | - |
| BAINH2_RS00565 (BAINH2_00565) | - | 103326..104417 (+) | 1092 | WP_003156398.1 | protein arginine kinase | - |
| BAINH2_RS00570 (BAINH2_00570) | clpC | 104414..106849 (+) | 2436 | WP_053573807.1 | ATP-dependent protease ATP-binding subunit ClpC | Regulator |
| BAINH2_RS00575 (BAINH2_00575) | radA | 106943..108322 (+) | 1380 | WP_014304212.1 | DNA repair protein RadA | Machinery gene |
| BAINH2_RS00580 (BAINH2_00580) | disA | 108326..109408 (+) | 1083 | WP_007410390.1 | DNA integrity scanning diadenylate cyclase DisA | - |
| BAINH2_RS00585 (BAINH2_00585) | - | 109522..110622 (+) | 1101 | WP_003156403.1 | PIN/TRAM domain-containing protein | - |
| BAINH2_RS00590 (BAINH2_00590) | ispD | 110635..111333 (+) | 699 | WP_015239038.1 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase | - |
| BAINH2_RS00595 (BAINH2_00595) | ispF | 111326..111802 (+) | 477 | WP_003156407.1 | 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase | - |
Sequence
Protein
Download Length: 811 a.a. Molecular weight: 90164.58 Da Isoelectric Point: 5.8528
>NTDB_id=485174 BAINH2_RS00570 WP_053573807.1 104414..106849(+) (clpC) [Bacillus amyloliquefaciens strain INH2-4b]
MMFGRFTERAQKVLALAQEEALRLGHTNIGTEHILLGLVREGEGIAFKALEALGLNSDKMQKEVESLIGRGQESTTSVPH
YTPRAKKVIELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGSNETGSSASGTNSNAN
TPTLDSLARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRV
MTLDMGTVVAGTKYRGEFEDRLKKVMDEIRQAGNIILFIDELHTLIGAGGAEGAIDASNILKPSLARGELQCIGATTLDE
YRKYIEKDAALERRFQPIQVDQPSADESIQILKGLRDRYEAHHRVSITDEAIEAAVKLSDRYISDRFLPDKAIDLIDEAG
SKVRLRSFTTPPNLKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKKTWKEKQGQENSEVSVEDIAMV
VSSWTGVPVSKIAQTETDKLLNMESILHSRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALA
ESIFGDEEAMIRVDMSEYMEKHSTSRLVGSPPGYVGYDEGGQLTEKVRRKPYSVVLLDEIEKAHPDVFNILLQVLEDGRL
TDSKGRTVDFRNTILIMTSNVGASELKRNKYVGFNVQDESQNHKDMKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHL
TDIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAEEGVDLEYGARPLRRAIQKHVEDRLSEELLRGNIDKGQHIVLDVEDG
EFVVKTTAKTN
MMFGRFTERAQKVLALAQEEALRLGHTNIGTEHILLGLVREGEGIAFKALEALGLNSDKMQKEVESLIGRGQESTTSVPH
YTPRAKKVIELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGSNETGSSASGTNSNAN
TPTLDSLARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRV
MTLDMGTVVAGTKYRGEFEDRLKKVMDEIRQAGNIILFIDELHTLIGAGGAEGAIDASNILKPSLARGELQCIGATTLDE
YRKYIEKDAALERRFQPIQVDQPSADESIQILKGLRDRYEAHHRVSITDEAIEAAVKLSDRYISDRFLPDKAIDLIDEAG
SKVRLRSFTTPPNLKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKKTWKEKQGQENSEVSVEDIAMV
VSSWTGVPVSKIAQTETDKLLNMESILHSRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALA
ESIFGDEEAMIRVDMSEYMEKHSTSRLVGSPPGYVGYDEGGQLTEKVRRKPYSVVLLDEIEKAHPDVFNILLQVLEDGRL
TDSKGRTVDFRNTILIMTSNVGASELKRNKYVGFNVQDESQNHKDMKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHL
TDIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAEEGVDLEYGARPLRRAIQKHVEDRLSEELLRGNIDKGQHIVLDVEDG
EFVVKTTAKTN
Nucleotide
Download Length: 2436 bp
>NTDB_id=485174 BAINH2_RS00570 WP_053573807.1 104414..106849(+) (clpC) [Bacillus amyloliquefaciens strain INH2-4b]
ATGATGTTTGGAAGGTTTACAGAGCGAGCTCAAAAGGTATTGGCACTGGCACAGGAAGAAGCACTGCGCTTAGGCCATAC
AAATATCGGAACTGAACATATACTATTAGGGTTAGTCCGTGAAGGTGAAGGGATAGCATTTAAAGCTTTAGAAGCGCTTG
GCCTTAATTCAGATAAAATGCAGAAAGAAGTGGAAAGTTTGATCGGTCGAGGGCAGGAGAGCACCACCTCTGTTCCTCAT
TACACACCTCGAGCCAAAAAGGTAATAGAGTTATCAATGGATGAAGCTAGAAAGCTAGGACATTCTTATGTGGGAACAGA
ACACATACTTCTCGGACTGATTCGTGAAGGAGAAGGCGTAGCGGCGAGAGTTCTGAATAATCTCGGTGTCAGCTTGAATA
AGGCGAGACAGCAAGTGCTGCAGCTTCTGGGAAGCAATGAGACGGGGTCTTCTGCATCCGGTACGAACAGTAATGCGAAC
ACGCCGACGCTTGACAGCTTGGCGCGTGATTTAACTGCGATTGCGAAGGAAGACAGTCTTGATCCGGTTATCGGCCGAAG
CAAAGAAATTCAGCGTGTTATTGAGGTATTAAGCCGCAGAACGAAGAATAACCCCGTTCTTATCGGAGAACCGGGTGTAG
GTAAAACTGCGATTGCTGAAGGCCTTGCACAGCAGATCATCAATAATGAAGTGCCGGAAATTTTACGTGATAAACGCGTA
ATGACATTAGACATGGGTACGGTTGTAGCCGGTACGAAATACCGCGGAGAATTTGAAGACCGCTTGAAAAAAGTAATGGA
TGAAATACGTCAGGCCGGCAATATTATTTTATTCATTGACGAACTGCATACACTGATCGGAGCGGGGGGAGCAGAAGGTG
CGATTGACGCGTCGAATATCTTAAAACCTTCACTGGCCCGCGGAGAGCTTCAATGCATCGGTGCGACAACACTTGATGAA
TACCGTAAATATATCGAAAAAGACGCCGCTCTCGAGCGCCGTTTCCAGCCGATTCAGGTGGATCAGCCGTCAGCCGATGA
AAGCATTCAAATTTTAAAAGGACTCCGTGACCGCTATGAAGCGCATCACCGCGTATCCATTACCGATGAAGCGATTGAAG
CGGCGGTAAAATTGTCCGACCGTTATATTTCTGACCGCTTCCTTCCGGATAAAGCGATCGATTTAATTGATGAAGCCGGT
TCAAAAGTGCGTCTCCGTTCTTTCACAACGCCTCCGAACTTAAAAGAGCTTGAGCAGAAACTCGATGAAGTTCGCAAGGA
AAAAGACGCTGCTGTTCAGAGCCAGGAGTTTGAAAAAGCGGCTTCCCTTCGTGATACGGAGCAGCGCCTGAGAGAACAGG
TGGAAGACACGAAAAAAACGTGGAAAGAAAAACAAGGCCAGGAGAACTCCGAAGTTTCTGTAGAGGATATCGCAATGGTT
GTATCCAGCTGGACCGGGGTGCCTGTATCTAAAATTGCCCAAACGGAAACAGATAAGCTTCTCAATATGGAAAGCATTCT
GCACTCCCGCGTCATCGGCCAGGATGAAGCCGTTGTAGCCGTTGCAAAGGCTGTCAGACGTGCAAGAGCCGGTCTGAAGG
ACCCGAAACGCCCGATTGGTTCATTCATCTTCCTAGGCCCTACAGGCGTTGGGAAGACAGAGCTGGCAAGAGCGCTGGCG
GAATCCATTTTCGGTGATGAGGAAGCGATGATCAGAGTGGATATGTCCGAATACATGGAGAAACACTCAACTTCACGTCT
TGTCGGTTCTCCTCCGGGATATGTCGGCTATGATGAAGGCGGCCAGCTGACAGAAAAAGTGAGAAGAAAACCTTACTCTG
TCGTACTGCTTGATGAAATTGAAAAAGCGCACCCTGATGTGTTTAACATACTCCTGCAAGTGCTTGAAGACGGACGATTG
ACTGATTCAAAAGGACGCACTGTGGATTTCCGCAACACGATCCTGATTATGACGTCAAACGTCGGAGCGAGCGAGCTGAA
ACGCAACAAATATGTGGGCTTCAATGTGCAGGATGAATCACAAAACCATAAAGACATGAAAGACAAAGTCATGGGAGAGC
TGAAGCGTGCCTTCAGACCTGAGTTTATCAACCGGATTGACGAAATTATCGTCTTCCACTCCCTTGAGAAAAAACATCTT
ACAGACATCGTGTCGCTTATGTCTGATCAGTTAACAAAACGTCTGAAAGAACAAGATCTCTCTATCGAGCTGACGGATGC
TGCAAAAGCAAAAGTGGCAGAAGAGGGCGTCGATTTGGAATACGGCGCACGTCCGTTAAGAAGAGCGATTCAAAAGCATG
TGGAGGACCGGTTATCAGAAGAACTCCTCAGAGGCAATATTGATAAAGGCCAGCACATTGTTCTTGATGTTGAGGACGGC
GAATTTGTCGTAAAAACAACTGCTAAAACGAACTAA
ATGATGTTTGGAAGGTTTACAGAGCGAGCTCAAAAGGTATTGGCACTGGCACAGGAAGAAGCACTGCGCTTAGGCCATAC
AAATATCGGAACTGAACATATACTATTAGGGTTAGTCCGTGAAGGTGAAGGGATAGCATTTAAAGCTTTAGAAGCGCTTG
GCCTTAATTCAGATAAAATGCAGAAAGAAGTGGAAAGTTTGATCGGTCGAGGGCAGGAGAGCACCACCTCTGTTCCTCAT
TACACACCTCGAGCCAAAAAGGTAATAGAGTTATCAATGGATGAAGCTAGAAAGCTAGGACATTCTTATGTGGGAACAGA
ACACATACTTCTCGGACTGATTCGTGAAGGAGAAGGCGTAGCGGCGAGAGTTCTGAATAATCTCGGTGTCAGCTTGAATA
AGGCGAGACAGCAAGTGCTGCAGCTTCTGGGAAGCAATGAGACGGGGTCTTCTGCATCCGGTACGAACAGTAATGCGAAC
ACGCCGACGCTTGACAGCTTGGCGCGTGATTTAACTGCGATTGCGAAGGAAGACAGTCTTGATCCGGTTATCGGCCGAAG
CAAAGAAATTCAGCGTGTTATTGAGGTATTAAGCCGCAGAACGAAGAATAACCCCGTTCTTATCGGAGAACCGGGTGTAG
GTAAAACTGCGATTGCTGAAGGCCTTGCACAGCAGATCATCAATAATGAAGTGCCGGAAATTTTACGTGATAAACGCGTA
ATGACATTAGACATGGGTACGGTTGTAGCCGGTACGAAATACCGCGGAGAATTTGAAGACCGCTTGAAAAAAGTAATGGA
TGAAATACGTCAGGCCGGCAATATTATTTTATTCATTGACGAACTGCATACACTGATCGGAGCGGGGGGAGCAGAAGGTG
CGATTGACGCGTCGAATATCTTAAAACCTTCACTGGCCCGCGGAGAGCTTCAATGCATCGGTGCGACAACACTTGATGAA
TACCGTAAATATATCGAAAAAGACGCCGCTCTCGAGCGCCGTTTCCAGCCGATTCAGGTGGATCAGCCGTCAGCCGATGA
AAGCATTCAAATTTTAAAAGGACTCCGTGACCGCTATGAAGCGCATCACCGCGTATCCATTACCGATGAAGCGATTGAAG
CGGCGGTAAAATTGTCCGACCGTTATATTTCTGACCGCTTCCTTCCGGATAAAGCGATCGATTTAATTGATGAAGCCGGT
TCAAAAGTGCGTCTCCGTTCTTTCACAACGCCTCCGAACTTAAAAGAGCTTGAGCAGAAACTCGATGAAGTTCGCAAGGA
AAAAGACGCTGCTGTTCAGAGCCAGGAGTTTGAAAAAGCGGCTTCCCTTCGTGATACGGAGCAGCGCCTGAGAGAACAGG
TGGAAGACACGAAAAAAACGTGGAAAGAAAAACAAGGCCAGGAGAACTCCGAAGTTTCTGTAGAGGATATCGCAATGGTT
GTATCCAGCTGGACCGGGGTGCCTGTATCTAAAATTGCCCAAACGGAAACAGATAAGCTTCTCAATATGGAAAGCATTCT
GCACTCCCGCGTCATCGGCCAGGATGAAGCCGTTGTAGCCGTTGCAAAGGCTGTCAGACGTGCAAGAGCCGGTCTGAAGG
ACCCGAAACGCCCGATTGGTTCATTCATCTTCCTAGGCCCTACAGGCGTTGGGAAGACAGAGCTGGCAAGAGCGCTGGCG
GAATCCATTTTCGGTGATGAGGAAGCGATGATCAGAGTGGATATGTCCGAATACATGGAGAAACACTCAACTTCACGTCT
TGTCGGTTCTCCTCCGGGATATGTCGGCTATGATGAAGGCGGCCAGCTGACAGAAAAAGTGAGAAGAAAACCTTACTCTG
TCGTACTGCTTGATGAAATTGAAAAAGCGCACCCTGATGTGTTTAACATACTCCTGCAAGTGCTTGAAGACGGACGATTG
ACTGATTCAAAAGGACGCACTGTGGATTTCCGCAACACGATCCTGATTATGACGTCAAACGTCGGAGCGAGCGAGCTGAA
ACGCAACAAATATGTGGGCTTCAATGTGCAGGATGAATCACAAAACCATAAAGACATGAAAGACAAAGTCATGGGAGAGC
TGAAGCGTGCCTTCAGACCTGAGTTTATCAACCGGATTGACGAAATTATCGTCTTCCACTCCCTTGAGAAAAAACATCTT
ACAGACATCGTGTCGCTTATGTCTGATCAGTTAACAAAACGTCTGAAAGAACAAGATCTCTCTATCGAGCTGACGGATGC
TGCAAAAGCAAAAGTGGCAGAAGAGGGCGTCGATTTGGAATACGGCGCACGTCCGTTAAGAAGAGCGATTCAAAAGCATG
TGGAGGACCGGTTATCAGAAGAACTCCTCAGAGGCAATATTGATAAAGGCCAGCACATTGTTCTTGATGTTGAGGACGGC
GAATTTGTCGTAAAAACAACTGCTAAAACGAACTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| clpC | Bacillus subtilis subsp. subtilis str. 168 |
96.917 |
100 |
0.969 |
| clpC | Lactococcus lactis subsp. lactis strain DGCC12653 |
49.688 |
98.767 |
0.491 |
| clpC | Streptococcus thermophilus LMD-9 |
46.359 |
100 |
0.471 |
| clpC | Streptococcus thermophilus LMG 18311 |
46.117 |
100 |
0.469 |
| clpC | Streptococcus pneumoniae Rx1 |
45.141 |
100 |
0.453 |
| clpC | Streptococcus pneumoniae D39 |
45.141 |
100 |
0.453 |
| clpC | Streptococcus mutans UA159 |
44.203 |
100 |
0.451 |
| clpC | Streptococcus pneumoniae TIGR4 |
44.895 |
100 |
0.45 |
| clpE | Streptococcus mutans UA159 |
53.313 |
80.025 |
0.427 |
| clpC | Lactococcus lactis subsp. cremoris KW2 |
49.709 |
84.834 |
0.422 |
| clpE | Streptococcus pneumoniae TIGR4 |
52.388 |
80.025 |
0.419 |
| clpE | Streptococcus pneumoniae Rx1 |
52.388 |
80.025 |
0.419 |
| clpE | Streptococcus pneumoniae D39 |
52.388 |
80.025 |
0.419 |
| clpE | Streptococcus pneumoniae R6 |
52.388 |
80.025 |
0.419 |