Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   BAINH2_RS00240 Genome accession   NZ_CP061852
Coordinates   45848..46138 (-) Length   96 a.a.
NCBI ID   WP_169510469.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain INH2-4b     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 40848..51138
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAINH2_RS00200 (BAINH2_00200) darA 40865..41194 (+) 330 WP_004264734.1 cyclic di-AMP receptor DarA -
  BAINH2_RS00205 (BAINH2_00205) - 41207..41647 (+) 441 WP_004264730.1 YaaR family protein -
  BAINH2_RS00210 (BAINH2_00210) holB 41659..42648 (+) 990 WP_007409919.1 DNA polymerase III subunit delta' -
  BAINH2_RS00215 (BAINH2_00215) ricT 42651..43478 (+) 828 WP_004264723.1 competence/sporulation regulator complex protein RicT -
  BAINH2_RS00220 (BAINH2_00220) yabA 43493..43852 (+) 360 WP_004264720.1 replication initiation-control protein YabA -
  BAINH2_RS00225 (BAINH2_00225) - 43913..44656 (+) 744 WP_004264717.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  BAINH2_RS00230 (BAINH2_00230) - 44643..44942 (+) 300 WP_007409921.1 GIY-YIG nuclease family protein -
  BAINH2_RS00235 (BAINH2_00235) rsmI 44917..45798 (+) 882 WP_053573815.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  BAINH2_RS00240 (BAINH2_00240) abrB 45848..46138 (-) 291 WP_169510469.1 transition state genes transcriptional regulator AbrB Regulator
  BAINH2_RS00245 (BAINH2_00245) metG 46622..48613 (+) 1992 WP_053573816.1 methionine--tRNA ligase -
  BAINH2_RS00250 (BAINH2_00250) - 48690..49457 (+) 768 WP_053573817.1 TatD family hydrolase -
  BAINH2_RS00255 (BAINH2_00255) - 49592..50917 (+) 1326 WP_108702423.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10753.57 Da        Isoelectric Point: 6.3482

>NTDB_id=485173 BAINH2_RS00240 WP_169510469.1 45848..46138(-) (abrB) [Bacillus amyloliquefaciens strain INH2-4b]
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=485173 BAINH2_RS00240 WP_169510469.1 45848..46138(-) (abrB) [Bacillus amyloliquefaciens strain INH2-4b]
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTCGTTATCCCTATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTCAGCAAAGAGGGC
GCTGAGCAAATCATCTCTGAAATTCAAAACCAGCTTCAAAACCAAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

97.917

100

0.979