Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   I872_RS04485 Genome accession   NC_021175
Coordinates   914266..915336 (+) Length   356 a.a.
NCBI ID   WP_015604956.1    Uniprot ID   A0ABN4B4J1
Organism   Streptococcus cristatus AS 1.3089     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 909266..920336
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I872_RS04460 (I872_04475) - 909969..910667 (+) 699 WP_015604952.1 GntR family transcriptional regulator -
  I872_RS04465 (I872_04480) - 910783..911115 (+) 333 WP_005590307.1 putative DNA-binding protein -
  I872_RS04470 (I872_04485) ffh 911171..912739 (+) 1569 WP_015604953.1 signal recognition particle protein -
  I872_RS04475 (I872_04490) - 912800..913591 (+) 792 WP_015604954.1 alpha/beta hydrolase -
  I872_RS04480 (I872_04495) - 913641..914084 (+) 444 WP_015604955.1 MepB family protein -
  I872_RS04485 (I872_04500) xerS 914266..915336 (+) 1071 WP_015604956.1 tyrosine recombinase XerS Machinery gene
  I872_RS04490 (I872_04505) - 915414..916046 (-) 633 WP_015604957.1 ABC transporter ATP-binding protein -
  I872_RS04495 (I872_04510) - 916048..918057 (-) 2010 WP_015604958.1 DUF1430 domain-containing protein -
  I872_RS04500 (I872_04515) - 918370..919359 (-) 990 WP_015604959.1 lipoate--protein ligase -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41375.47 Da        Isoelectric Point: 9.4170

>NTDB_id=48515 I872_RS04485 WP_015604956.1 914266..915336(+) (xerS) [Streptococcus cristatus AS 1.3089]
MEREILLERIDKLKQIMPWYVLEYYQSKLAVPYSFTTLYEYLKEYDRFFRWVLDSDISDASEIAEIPLSVLENMSKKDME
AFILYLRERPLLNANTTQNGVSQTTINRTLSALSSLYKYLTEEVENEQGEPYFYRNVMKKVATKKKKETLAARAENIKQK
LFLGDETEKFLQYIDTEYPKKLSNRALSSFNKNKERDLAIIALLLASGVRLSEAVNLDLKDINLKMMVIEVTRKGGKRDS
VNVAAFAKPYLEEYLSIRSKRYKAEKTDTAFFLTEYRGTPNRIDASSVEKMVAKYSEDFKVRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDKL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=48515 I872_RS04485 WP_015604956.1 914266..915336(+) (xerS) [Streptococcus cristatus AS 1.3089]
ATGGAACGCGAGATTTTATTGGAACGAATTGATAAACTGAAGCAGATTATGCCCTGGTACGTTCTAGAATACTACCAATC
CAAGCTGGCAGTGCCTTATAGTTTTACAACCTTATATGAATACCTCAAGGAATACGATCGATTTTTTCGCTGGGTTTTAG
ACTCCGATATTTCTGACGCTTCAGAGATTGCTGAGATCCCTCTTTCTGTCTTGGAAAATATGAGCAAGAAAGACATGGAG
GCCTTCATTCTGTATCTGCGAGAGAGGCCGCTCCTCAATGCCAACACGACACAAAACGGTGTTTCCCAGACAACCATCAA
TCGGACTCTGTCAGCTTTGTCCAGCCTCTACAAATATTTGACTGAGGAAGTGGAAAACGAGCAGGGTGAGCCCTACTTCT
ATCGAAATGTAATGAAAAAAGTTGCTACTAAGAAGAAAAAAGAAACTCTGGCTGCTCGTGCAGAGAATATTAAGCAGAAG
CTCTTTTTAGGGGATGAAACCGAGAAATTTCTCCAGTATATCGATACGGAGTACCCTAAGAAGCTCTCTAATCGGGCCCT
GTCCTCTTTCAACAAAAACAAGGAACGAGATTTAGCCATCATTGCCTTGCTGCTAGCCTCTGGTGTTCGTCTGTCTGAAG
CTGTTAATCTGGACCTAAAAGATATCAATCTCAAGATGATGGTTATTGAGGTGACAAGGAAAGGTGGCAAACGTGACTCA
GTCAATGTTGCTGCTTTTGCCAAACCCTATTTAGAGGAATATTTGAGCATTCGGAGCAAACGATACAAGGCCGAAAAGAC
GGATACAGCCTTCTTTTTGACTGAATACCGTGGCACTCCTAACCGAATCGATGCTTCCAGTGTCGAAAAAATGGTGGCCA
AATATTCTGAGGACTTCAAGGTGCGGGTGACACCTCACAAACTCCGCCATACACTTGCTACACGTTTGTATGACGCAACA
AAATCTCAAGTTCTCGTCAGTCACCAGCTAGGTCACGCCAGCACACAAGTCACTGACCTCTATACCCATATCGTCAATGA
TGAGCAAAAGAATGCTCTGGATAAGCTCTAG

Domains

Predicted by InterProScan.

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4)

(33-122)

Phage integrase family (Phage_integrase)

(188-344)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

90.73

100

0.907

Multiple sequence alignment