Detailed information NTG0048511

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: I872_RS04005
• Genome accession: NC_021175
• Coordinates: 833419..834531 (+)
• Length: 370 a.a.
• NCBI ID: WP_002895944.1
• Uniprot ID: A0ABM5NJD0
• Organism: Streptococcus cristatus AS 1.3089
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 828419..839531

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I872_RS03985 (I872_03980)	-	828963..830318 (+)	1356	WP_015604864.1	ISLre2 family transposase	-
I872_RS03990 (I872_03985)	rpsU	830663..830839 (+)	177	WP_000048054.1	30S ribosomal protein S21	-
I872_RS03995 (I872_03995)	mscL	831090..831476 (-)	387	WP_015604866.1	large conductance mechanosensitive channel protein MscL	-
I872_RS04000 (I872_04000)	dnaG	831611..833416 (+)	1806	WP_041826791.1	DNA primase	-
I872_RS04005 (I872_04005)	rpoS	833419..834531 (+)	1113	WP_002895944.1	RNA polymerase sigma factor RpoD	Regulator
I872_RS04010 (I872_04010)	-	834658..834996 (+)	339	WP_015604868.1	metal-sulfur cluster assembly factor	-
I872_RS04015 (I872_04015)	birA	835220..836155 (-)	936	WP_015604869.1	bifunctional biotin--[acetyl-CoA-carboxylase] ligase/biotin operon repressor BirA	-
I872_RS04020 (I872_04020)	-	836170..837171 (-)	1002	WP_015604870.1	LacI family DNA-binding transcriptional regulator	-
I872_RS04025 (I872_04025)	-	837370..838548 (+)	1179	WP_015604871.1	galactokinase	-

Sequence

Protein

• Length: 370 a.a.
• Molecular weight: 42318.94 Da
• Isoelectric Point: 4.4233

>NTDB_id=48511 I872_RS04005 WP_002895944.1 833419..834531(+) (rpoS) [Streptococcus cristatus AS 1.3089]
MATKQKEVTTLDVQIAEFIRNHKQTGVATDDEINDQLVIPFTLDADGIEDLLQRIQDAGISITDKEGNPSARVLNTEEEE
AELTDEELLGSNSAKVNDPVRMYLKEIGVVPLLSNEEEQELAILVEQGDLEAKQRLAEANLRLVVSIAKRYVGRGMQFLD
LIQEGNMGLMKAVDKFDYTKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQI
AERMDMTPDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDEVIENPVDYTTRVVLREQLDEVLDTLTDREENVLRLRF
GLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRHPSRSKPLRDFIED

Nucleotide

• Length: 1113 bp

>NTDB_id=48511 I872_RS04005 WP_002895944.1 833419..834531(+) (rpoS) [Streptococcus cristatus AS 1.3089]
ATGGCTACAAAACAAAAAGAAGTAACAACATTAGACGTTCAAATTGCAGAATTCATTCGCAATCACAAGCAGACAGGTGT
AGCGACAGACGATGAAATCAATGACCAACTGGTCATTCCTTTCACTTTGGATGCTGATGGGATTGAGGATTTGCTGCAAC
GCATTCAGGATGCGGGCATTTCTATCACGGATAAGGAAGGAAATCCCAGTGCGCGTGTCTTGAATACTGAAGAGGAAGAA
GCGGAGTTGACGGATGAAGAGCTCTTGGGTAGCAATTCAGCCAAGGTCAATGACCCAGTCCGCATGTATCTGAAAGAAAT
CGGAGTTGTACCGCTTCTCAGCAATGAAGAAGAACAGGAACTGGCAATCTTGGTAGAGCAGGGTGACTTGGAAGCCAAGC
AGCGTCTGGCTGAGGCCAATCTTCGTCTGGTTGTTTCCATTGCTAAGCGTTATGTTGGCCGTGGTATGCAGTTCCTTGAT
TTGATTCAAGAAGGAAATATGGGACTGATGAAGGCCGTTGATAAGTTTGACTACACCAAAGGATTTAAGTTTTCAACTTA
TGCGACTTGGTGGATTCGTCAGGCTATTACTCGTGCAATTGCTGACCAAGCTCGGACTATTCGGATTCCAGTTCATATGG
TGGAAACCATTAACAAATTAGTTCGCGAACAACGCAATCTCTTGCAGGAATTGGGTCAAGACCCAACACCAGAGCAAATC
GCTGAGCGCATGGATATGACACCAGATAAGGTTCGTGAGATTCTCAAGATTGCTCAGGAGCCAGTTTCTTTGGAAACACC
TATCGGTGAGGAAGATGACAGTCATCTGGGAGACTTTATCGAAGATGAAGTGATTGAAAATCCAGTTGACTACACAACTC
GTGTCGTTCTCCGCGAGCAGCTGGATGAGGTCTTGGATACGCTGACAGACCGCGAGGAAAATGTCTTACGTCTGCGCTTT
GGTCTGGACGATGGAAAAATGCGGACGCTGGAAGATGTCGGCAAGGTCTTCAATGTCACTCGCGAGCGGATTCGCCAGAT
TGAAGCCAAGGCTCTGCGTAAACTTCGCCATCCAAGCCGCAGCAAACCACTAAGAGACTTTATCGAAGATTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 2 (Sigma70_r2) (136-205)

• Sigma-70 region 3 (Sigma70_r3) (215-291)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (98-130)

• Sigma-70, region 4 (Sigma70_r4) (304-357)

• Sigma-70 factor, region 1.1 (Sigma70_r1_1) (14-87)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	46.575	78.919	0.368