Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   IF132_RS19195 Genome accession   NZ_CP061845
Coordinates   2920971..2922389 (+) Length   472 a.a.
NCBI ID   WP_039429913.1    Uniprot ID   -
Organism   Vibrio navarrensis strain 2540-90     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 2915971..2927389
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IF132_RS19180 (IF132_20250) vceB 2916426..2917961 (+) 1536 WP_039429920.1 multidrug efflux MFS transporter permease subunit VceB -
  IF132_RS19190 (IF132_20260) uvrB 2918678..2920708 (+) 2031 WP_039429915.1 excinuclease ABC subunit UvrB -
  IF132_RS19195 (IF132_20265) luxO 2920971..2922389 (+) 1419 WP_039429913.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  IF132_RS19200 (IF132_20270) luxU 2922373..2922705 (+) 333 WP_039429910.1 quorum-sensing phosphorelay protein LuxU -
  IF132_RS19205 (IF132_20275) - 2922776..2923669 (-) 894 WP_039429908.1 YvcK family protein -
  IF132_RS19210 (IF132_20280) moaA 2923972..2924961 (+) 990 WP_039429905.1 GTP 3',8-cyclase MoaA -
  IF132_RS19215 (IF132_20285) moaB 2925036..2925548 (+) 513 WP_039429902.1 molybdenum cofactor biosynthesis protein B -
  IF132_RS19220 (IF132_20290) moaC 2925559..2926038 (+) 480 WP_039429900.1 cyclic pyranopterin monophosphate synthase MoaC -
  IF132_RS19225 (IF132_20295) moaD 2926035..2926280 (+) 246 WP_039429897.1 molybdopterin synthase sulfur carrier subunit -
  IF132_RS19230 (IF132_20300) moaE 2926283..2926744 (+) 462 WP_039429894.1 molybdopterin synthase catalytic subunit MoaE -

Sequence

Protein


Download         Length: 472 a.a.        Molecular weight: 52857.40 Da        Isoelectric Point: 6.1994

>NTDB_id=485061 IF132_RS19195 WP_039429913.1 2920971..2922389(+) (luxO) [Vibrio navarrensis strain 2540-90]
MQHTTDAPRSRYLLMVEDTASVAALYRSYLTPLGIDINIVGTGRDAIESLKHRIPDLILLDLRLPDMTGMDVLHAVKASH
PDVPIIFMTAHGSIDTAVEAMRHGSQDFLIKPCEADRLRVTVNNAIRKASKLKNEADSPANQNYQGFIGSSQKMQQVYRT
IDSAASSKASIFITGESGTGKEVCAEAIHAASRRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDRQGAAELADG
GTLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRE
RGEDVIEIAYSLLGYMSHEEGKNFVRFSPQVLERFNEYEWPGNVRQLQNVLRNIVVLNNGKEITLEMLPPPLNQPLARSE
NRLFKELEPVSVTDIYPLWMTEKMAIEQAIKACDGNIPRAAGYLDVSPSTIYRKLQTWNSKEEIRARDGITE

Nucleotide


Download         Length: 1419 bp        

>NTDB_id=485061 IF132_RS19195 WP_039429913.1 2920971..2922389(+) (luxO) [Vibrio navarrensis strain 2540-90]
ATGCAACACACTACTGATGCGCCGCGCTCGCGTTACCTTCTCATGGTGGAAGATACTGCGTCTGTTGCGGCTTTATACCG
ATCCTATCTAACGCCATTGGGTATCGACATTAATATTGTCGGTACTGGACGCGATGCGATTGAAAGTCTCAAACACCGAA
TTCCGGATCTGATCCTGCTTGATTTAAGGTTACCTGATATGACCGGGATGGATGTACTGCACGCAGTGAAAGCCAGTCAT
CCCGATGTCCCGATTATCTTTATGACCGCGCACGGTTCGATAGATACTGCAGTCGAGGCGATGCGACATGGTTCACAAGA
CTTTTTGATTAAACCTTGTGAAGCAGATCGCTTGCGGGTCACGGTCAATAACGCCATTCGTAAAGCCAGCAAACTGAAAA
ATGAAGCCGACAGCCCGGCGAATCAGAACTACCAAGGTTTCATTGGTAGTAGCCAGAAAATGCAGCAGGTTTACCGCACC
ATAGATTCAGCGGCAAGCAGCAAAGCGAGTATTTTCATCACCGGAGAAAGTGGTACGGGGAAAGAAGTCTGTGCAGAGGC
CATTCACGCCGCGAGTCGTCGTGGCGACAAGCCTTTCATCGCGATCAACTGTGCGGCGATTCCCAAAGATTTGATTGAAA
GTGAGCTGTTTGGCCACGTAAAAGGTGCTTTTACCGGCGCAGCGACGGATCGGCAAGGGGCGGCAGAATTAGCCGATGGC
GGTACTTTGTTTCTTGATGAGCTGTGCGAAATGGATTTGGATTTGCAAACCAAGTTGTTGCGCTTTATCCAAACAGGCAC
GTTCCAGAAAGTCGGCTCGTCAAAAATGAAAAGTGTCGATGTGCGTTTTGTTTGTGCCACCAACCGCGATCCTTGGAAAG
AAGTTCAAGAAGGGCGTTTTCGTGAGGACTTGTACTACCGCTTGTATGTGATCCCACTGCATCTTCCTCCGCTGCGAGAG
CGGGGAGAGGATGTGATAGAAATCGCCTACTCTTTACTGGGTTACATGTCTCATGAAGAGGGCAAAAACTTTGTACGTTT
CTCTCCACAGGTACTTGAGCGATTCAATGAGTACGAATGGCCTGGCAATGTGCGACAGCTCCAAAACGTGCTGCGCAACA
TAGTAGTACTAAACAATGGTAAGGAAATTACCTTGGAGATGTTGCCACCGCCGTTAAACCAACCATTGGCTCGCAGTGAA
AATCGCCTATTCAAAGAGTTAGAGCCGGTTTCTGTAACAGATATCTACCCGTTATGGATGACAGAAAAAATGGCGATTGA
GCAGGCGATCAAAGCGTGTGATGGCAATATTCCACGTGCTGCAGGTTACTTGGACGTTAGTCCATCGACTATCTATCGCA
AACTCCAAACTTGGAACAGTAAAGAAGAGATCAGGGCCCGTGATGGAATTACTGAATAA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(148-313)

Bacterial regulatory protein, Fis family (HTH_8)

(418-456)

Response regulator receiver domain (Response_reg)

(14-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

86.534

95.975

0.831