Detailed information NTG0485060

Bioinformatically predicted

Overview

• Name: chiS
• Type: Regulator
• Locus tag: IF132_RS17555
• Genome accession: NZ_CP061845
• Coordinates: 2561337..2564726 (-)
• Length: 1129 a.a.
• NCBI ID: WP_039430401.1
• Uniprot ID: A0A099LN64
• Organism: Vibrio navarrensis strain 2540-90
• Function: chitin sensor (predicted from homology) Competence regulation

Genomic Context

Location: 2556337..2569726

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IF132_RS17540 (IF132_18605)	-	2556806..2557831 (-)	1026	WP_039430404.1	ABC transporter permease	-
IF132_RS17545 (IF132_18610)	-	2557834..2558820 (-)	987	WP_039430403.1	ABC transporter permease	-
IF132_RS17550 (IF132_18615)	-	2558987..2560660 (-)	1674	WP_039430402.1	ABC transporter substrate-binding protein	-
IF132_RS17555 (IF132_18620)	chiS	2561337..2564726 (-)	3390	WP_039430401.1	response regulator	Regulator
IF132_RS17560 (IF132_18625)	rsmC	2564979..2566001 (-)	1023	WP_039430400.1	16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC	-
IF132_RS17565 (IF132_18630)	-	2566073..2567158 (-)	1086	WP_039431644.1	AI-2E family transporter	-
IF132_RS17570 (IF132_18635)	hemL	2567401..2568696 (-)	1296	WP_039430399.1	glutamate-1-semialdehyde 2,1-aminomutase	-
IF132_RS17575 (IF132_18640)	erpA	2568978..2569319 (+)	342	WP_039430398.1	iron-sulfur cluster insertion protein ErpA	-

Sequence

Protein

• Length: 1129 a.a.
• Molecular weight: 127190.55 Da
• Isoelectric Point: 6.3248

>NTDB_id=485060 IF132_RS17555 WP_039430401.1 2561337..2564726(-) (chiS) [Vibrio navarrensis strain 2540-90]
MFKFYRKQKFKRLQSTLMTAFLVLSLTPLTIIAIFFLQSHSKDLQEQSTSHLLSVRDTKQQQVMDYFQAQETEVMGFVRS
ELAYASGGRFYGLVNAFKSLGLDIEQARENAQQRYIPGSGDQIKTSILPESSSYVGSERYRLLHKRYHWAYLELLKRSDF
DDILLIDLDGNVTYSIYKYDNFGTNLKTGPYKDTLLGRSFRQLAKDVTEKRKDNEDYTPVLISDFAEEDGKQVAWLGAPI
IQQGYLHSYAMFRLPNNGLTKLVADVNKDAVIHTLLVGSDHLPRTMSTKQDDISQSAEVINKALAGLTSVGTYINGLGEA
TIAAFTPITLKGQTWALVVQLPESEAFARIQQLEKLFVIAMLIAIILVFICSHYLSNFITSPLLKLTWAAERVSAGDLDE
NMINTDRRDEIGRLAVSFERMQRSIRDKIQLIKTQNRELEKSLQLIQKQNDELQLADKLKDEFLATTSHELRTPLHGMIG
IAETLVSGANGPIPGNQKYQLDIIIKSGQRLANLVDDLLDYHKMRYGSLDIHKSAVSLASATRLVLELSSHLLGNKTLRI
INQVPNDLAPVSADPQRLEQVLYNLIGNAIKYTSEGKIVISANIVDGKARIQVVDTGQGIPAEQLEHIFEPLIQAGQDAG
RYRQGAGLGLSISRQLIELMGGSLYVSSQPMVGTTFSFTLPLASDEEINATAKMAQYHHFQAPDSNELLSLDQSSLPENP
QGALLVVADDEPVNLRVLESFLRIEGYRVKTASDGPETLALIKQEKPALLLLDIMMPGMSGYQVCHQLRQEFDLAELPII
MLTALNQSEDRVRGFEAGANDYLSKPFNKQELAARIKAHLMASKAEERRLENSRLEAELKQRAMVEASLLETQGRLLEQL
ESAPEAIICIREDKRIRFANEAACKLFKRNLEQLKRSNAEELIAPKYLTVKQPHYCGHIDIYVEDVRQHIETDILKLPAE
SGLDAMFIFNVGGGATASRIHNLETAVEVLSSYAFDGDKEKLQSLKELGGEFTRLADKALGSNQNKQEIMREVLVDVMTH
ALDYWESVTGENKFAFAEKSGLWRVYLDRSTLQTRTLDKYMRIETLPRTPRWRTVLSSIEFILAHCKEQSPERSYIEMQR
DKLQRLLTS

Nucleotide

• Length: 3390 bp

>NTDB_id=485060 IF132_RS17555 WP_039430401.1 2561337..2564726(-) (chiS) [Vibrio navarrensis strain 2540-90]
ATGTTTAAGTTTTACCGGAAACAGAAATTCAAACGTCTGCAAAGTACCCTGATGACGGCCTTTTTGGTGTTGAGTCTGAC
ACCATTAACCATCATTGCGATTTTCTTTTTGCAATCTCATAGCAAAGATCTGCAAGAGCAAAGCACTTCCCACCTCCTCT
CGGTGCGCGATACCAAGCAACAACAGGTGATGGATTATTTTCAGGCACAAGAAACCGAAGTGATGGGTTTTGTCCGTTCA
GAGTTAGCTTATGCCAGTGGTGGGCGTTTTTATGGCCTAGTCAACGCCTTTAAAAGCCTAGGTCTGGATATCGAGCAAGC
GCGCGAAAACGCCCAGCAACGCTATATTCCGGGCTCGGGCGATCAGATCAAAACGTCAATCTTGCCTGAATCCAGCAGCT
ATGTCGGTAGTGAACGTTACCGACTGCTGCACAAGCGCTATCACTGGGCCTACTTAGAACTACTCAAACGCTCCGATTTT
GACGACATCCTGCTCATCGATTTGGACGGCAACGTCACCTACTCCATCTATAAATACGATAATTTTGGTACCAACCTGAA
AACGGGGCCCTACAAAGACACTTTACTTGGAAGGAGCTTTCGCCAGCTTGCCAAAGACGTTACGGAAAAGCGCAAAGACA
ACGAAGATTACACCCCTGTGCTGATTTCCGATTTTGCCGAGGAAGATGGCAAACAGGTCGCTTGGTTAGGCGCACCCATC
ATTCAACAAGGCTACTTGCACAGTTATGCAATGTTCCGTTTACCGAACAATGGCTTAACTAAACTGGTTGCCGATGTAAA
CAAAGATGCAGTGATCCATACCTTGCTCGTCGGTAGTGACCACTTACCTCGCACCATGAGTACCAAGCAGGACGACATTA
GTCAAAGTGCAGAAGTGATCAACAAAGCATTGGCAGGCCTGACCTCGGTTGGAACCTACATAAACGGTTTAGGCGAAGCG
ACCATTGCCGCATTTACACCGATTACCCTCAAAGGACAAACTTGGGCGCTCGTAGTTCAATTGCCTGAAAGCGAAGCCTT
TGCTCGCATCCAACAATTGGAGAAACTGTTTGTCATCGCCATGCTGATTGCCATCATTCTGGTGTTTATCTGCTCACATT
ATCTGTCCAATTTCATTACCTCTCCGCTGCTTAAACTAACGTGGGCAGCAGAACGAGTCTCTGCTGGCGATCTTGACGAG
AATATGATCAATACAGATCGCCGGGATGAAATCGGCCGCTTGGCAGTTAGCTTTGAACGTATGCAGCGCTCCATTCGCGA
CAAAATTCAGTTAATCAAAACGCAAAACCGGGAGTTAGAAAAAAGTCTGCAATTGATCCAAAAGCAAAACGATGAGCTGC
AATTAGCCGATAAACTCAAAGATGAGTTCCTCGCGACCACCTCACACGAGTTGCGCACGCCATTGCATGGCATGATTGGC
ATTGCCGAAACCTTAGTCTCCGGAGCCAATGGTCCGATTCCTGGCAACCAAAAATATCAGCTCGATATCATCATCAAAAG
CGGCCAAAGGCTTGCAAACCTAGTCGACGACCTACTTGATTATCACAAAATGCGCTATGGCAGCTTGGACATTCATAAGT
CGGCGGTCAGTTTGGCCAGTGCCACCCGTTTAGTGCTTGAGCTTTCCAGTCATCTGCTCGGCAATAAAACACTGCGAATC
ATCAATCAAGTTCCAAACGATCTCGCCCCCGTGTCCGCTGATCCACAACGCTTGGAGCAAGTGTTGTACAACTTGATCGG
CAACGCGATTAAATACACCAGCGAAGGCAAAATCGTCATCTCCGCCAACATAGTAGACGGCAAAGCAAGAATTCAAGTCG
TGGACACTGGGCAGGGCATTCCAGCAGAACAACTGGAGCATATTTTTGAACCGTTAATTCAAGCGGGTCAGGATGCAGGT
CGTTATCGGCAAGGGGCGGGTCTTGGCCTCTCGATTAGCCGTCAGTTAATTGAACTGATGGGCGGCTCTCTGTATGTCAG
CAGCCAGCCAATGGTGGGTACAACCTTTAGTTTTACTTTACCTTTGGCCAGTGATGAGGAGATCAATGCCACAGCGAAGA
TGGCGCAATACCATCACTTCCAAGCGCCTGACAGCAATGAATTGCTCTCTCTCGACCAATCATCACTTCCAGAAAATCCG
CAGGGTGCATTGTTGGTGGTGGCTGACGATGAGCCTGTGAATCTACGTGTACTGGAAAGTTTCCTGCGCATTGAAGGTTA
TCGTGTCAAAACCGCTTCTGATGGCCCGGAAACACTCGCATTGATCAAGCAAGAGAAACCGGCGTTGTTGCTACTCGATA
TCATGATGCCGGGCATGAGTGGTTATCAGGTTTGCCACCAACTACGTCAAGAGTTCGATCTGGCGGAACTGCCCATCATC
ATGCTGACCGCACTCAATCAAAGCGAAGATCGCGTGCGCGGCTTTGAAGCGGGTGCCAACGACTACTTATCAAAACCGTT
TAATAAGCAAGAGCTTGCTGCTCGCATCAAGGCGCATCTGATGGCGAGCAAAGCTGAAGAGCGACGCTTGGAAAACAGCC
GCTTAGAAGCCGAGTTAAAACAGAGAGCGATGGTCGAGGCGAGTTTACTCGAGACGCAAGGACGACTACTGGAGCAACTG
GAATCGGCCCCTGAAGCCATCATCTGTATTCGGGAAGACAAGCGCATTCGTTTTGCCAACGAAGCCGCTTGTAAGCTGTT
TAAACGTAATTTAGAACAGCTCAAACGATCAAATGCAGAAGAGTTAATCGCACCTAAGTACCTAACCGTCAAACAGCCAC
ACTATTGCGGCCACATTGATATTTACGTCGAAGACGTAAGACAGCACATTGAAACCGACATTCTCAAATTGCCGGCAGAG
TCAGGCTTAGATGCCATGTTTATCTTTAACGTCGGTGGCGGCGCAACCGCGTCGCGCATTCACAACTTAGAAACCGCCGT
TGAGGTGCTCTCAAGCTATGCCTTTGATGGCGATAAAGAGAAACTGCAGAGCCTGAAAGAGCTCGGTGGCGAGTTTACGC
GATTAGCTGACAAAGCCTTGGGGAGCAACCAAAACAAGCAAGAGATAATGCGAGAGGTTTTGGTCGATGTGATGACCCAT
GCCTTAGACTACTGGGAGTCGGTCACAGGTGAGAACAAGTTTGCCTTTGCCGAGAAAAGCGGCTTGTGGCGCGTCTATCT
CGACCGAAGTACGCTGCAAACCCGCACTCTCGACAAATACATGCGCATTGAGACACTGCCAAGAACGCCTCGCTGGCGCA
CAGTACTTAGTTCTATTGAGTTTATTCTCGCGCATTGTAAAGAGCAAAGCCCAGAGCGTAGCTATATCGAAATGCAGCGC
GATAAGCTGCAACGTCTACTCACCAGCTAA

Domains

Predicted by InterproScan.

• His Kinase A (phospho-acceptor) domain (HisKA) (460-525)

• PAS fold (PAS) (877-926)

• HAMP domain (HAMP) (375-427)

• Response regulator receiver domain (Response_reg) (726-837)

• Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c) (574-683)

3D structure

• AlphaFold DB: A0A099LN64

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
chiS	Vibrio cholerae strain A1552	76.262	100	0.763