Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   IF132_RS17220 Genome accession   NZ_CP061845
Coordinates   2482885..2483403 (+) Length   172 a.a.
NCBI ID   WP_039430460.1    Uniprot ID   A0A0F2HW57
Organism   Vibrio navarrensis strain 2540-90     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2477885..2488403
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IF132_RS17210 (IF132_18275) gshA 2480637..2482202 (+) 1566 WP_039430461.1 glutamate--cysteine ligase -
  IF132_RS17215 (IF132_18280) - 2482165..2482821 (+) 657 WP_420719039.1 hypothetical protein -
  IF132_RS17220 (IF132_18285) luxS 2482885..2483403 (+) 519 WP_039430460.1 S-ribosylhomocysteine lyase Regulator
  IF132_RS17225 (IF132_18290) - 2483492..2484769 (-) 1278 WP_039430459.1 HlyC/CorC family transporter -
  IF132_RS17230 (IF132_18295) - 2484879..2485673 (-) 795 WP_039430458.1 cytochrome C assembly family protein -
  IF132_RS17235 (IF132_18300) ffh 2485886..2487265 (+) 1380 WP_039430457.1 signal recognition particle protein -
  IF132_RS17240 (IF132_18305) rpsP 2487522..2487770 (+) 249 WP_011079541.1 30S ribosomal protein S16 -
  IF132_RS17245 (IF132_18310) rimM 2487785..2488333 (+) 549 WP_039430456.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18932.71 Da        Isoelectric Point: 4.8362

>NTDB_id=485056 IF132_RS17220 WP_039430460.1 2482885..2483403(+) (luxS) [Vibrio navarrensis strain 2540-90]
MPLLDSFTVDHTRMQAPAVRVAKTMQTPKGDTITVFDLRFTVPNQDILSEKGIHTLEHLYAGFMRKHLNGESVEIIDISP
MGCRTGFYMSLIGAPTEQSVAAAWQASMEDVLKVESQNKIPELNEYQCGTAAMHSLEEAKQIASNILAAGISVNKNDDLA
LPAEMLKELKVD

Nucleotide


Download         Length: 519 bp        

>NTDB_id=485056 IF132_RS17220 WP_039430460.1 2482885..2483403(+) (luxS) [Vibrio navarrensis strain 2540-90]
ATGCCGTTATTAGATAGTTTTACCGTCGATCACACGAGAATGCAGGCACCGGCCGTGCGTGTTGCCAAAACCATGCAAAC
GCCAAAAGGCGACACCATTACCGTGTTTGACTTGCGTTTTACTGTGCCAAACCAAGACATTTTGTCGGAAAAAGGGATCC
ACACCTTAGAGCATTTGTATGCGGGCTTTATGCGCAAGCACCTCAATGGAGAGAGTGTAGAGATCATTGACATTTCGCCA
ATGGGATGTCGCACCGGTTTTTACATGAGCCTGATTGGTGCGCCGACAGAGCAAAGCGTTGCTGCTGCGTGGCAAGCGTC
GATGGAAGACGTGCTGAAAGTAGAAAGCCAGAACAAGATCCCAGAGCTGAACGAGTACCAATGTGGTACGGCGGCGATGC
ACTCGCTGGAAGAGGCAAAACAGATCGCCAGCAACATTCTCGCCGCGGGTATCTCAGTCAATAAAAACGATGACTTAGCA
TTGCCAGCCGAGATGCTCAAAGAGTTAAAAGTCGACTAG

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0F2HW57

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

86.55

99.419

0.86