Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   IF132_RS12770 Genome accession   NZ_CP061845
Coordinates   1545872..1546879 (+) Length   335 a.a.
NCBI ID   WP_039422966.1    Uniprot ID   A0A099LPP6
Organism   Vibrio navarrensis strain 2540-90     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1540872..1551879
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IF132_RS12760 (IF132_13800) rpmE 1542986..1543207 (-) 222 WP_039422972.1 50S ribosomal protein L31 -
  IF132_RS12765 (IF132_13805) priA 1543469..1545670 (+) 2202 WP_039422969.1 primosomal protein N' -
  IF132_RS12770 (IF132_13810) cytR 1545872..1546879 (+) 1008 WP_039422966.1 DNA-binding transcriptional regulator CytR Regulator
  IF132_RS12775 (IF132_13815) - 1547269..1547814 (+) 546 WP_039422963.1 SPOR domain-containing protein -
  IF132_RS12780 (IF132_13820) hslV 1547970..1548524 (+) 555 WP_039422960.1 ATP-dependent protease subunit HslV -
  IF132_RS12785 (IF132_13825) hslU 1548550..1549881 (+) 1332 WP_039422957.1 HslU--HslV peptidase ATPase subunit -
  IF132_RS12790 (IF132_13830) - 1550378..1551295 (+) 918 WP_039422953.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  IF132_RS12795 (IF132_13835) rraA 1551371..1551874 (+) 504 WP_039422950.1 ribonuclease E activity regulator RraA -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 36789.42 Da        Isoelectric Point: 5.7267

>NTDB_id=485039 IF132_RS12770 WP_039422966.1 1545872..1546879(+) (cytR) [Vibrio navarrensis strain 2540-90]
MATMKDVAQLAGVSTATVSRALMNPEKVSATTRKRVEDAVLEAGYSPNSLARNLRRNESKTIVTIVPDICDPYFTEIIRG
IEDAAMEQGYLVLLGDSGQQKRRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTLLGHKRIAQISGPSSAVLCQFRQQGYQQALRRAGITMNPDYCAEAEFSFAGGTEAIRQLLELPEPPTA
VFCHCDTMAIGAIQAAKKLGLRVPQDLSVVGFDDIQFAQYCDPPLTTISQPRYEIGRQAMLMMLEVLKGHEIHSGSRLLE
TQLVIRGSAAPPKMR

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=485039 IF132_RS12770 WP_039422966.1 1545872..1546879(+) (cytR) [Vibrio navarrensis strain 2540-90]
ATGGCGACAATGAAGGATGTTGCCCAGCTCGCTGGTGTCTCGACCGCCACGGTCTCAAGAGCACTAATGAATCCCGAAAA
AGTGTCGGCCACCACCAGAAAACGGGTGGAAGACGCGGTTTTAGAGGCTGGATATTCACCAAACTCGCTTGCAAGAAATT
TACGTCGGAATGAATCAAAAACCATAGTAACGATTGTCCCAGACATCTGCGACCCCTACTTTACCGAGATTATTCGCGGT
ATCGAAGACGCAGCGATGGAGCAAGGCTACTTAGTTTTACTGGGTGACAGTGGTCAGCAAAAGCGGCGCGAAAGCTCGTT
TGTCAACCTTGTCTTCACCAAACAGGCCGATGGTATGTTGCTGCTTGGCACCGATCTGCCGTTTGATGTCAGCAAGCCGG
AGCAGAAAAACCTGCCACCGATGGTGATGGCGTGTGAGTTCGCCCCCGAGCTCGAACTGCCCACCGTGCACATCGACAAC
CTAACCTCGGCGTTTGAAGCCGTGAACTACTTAACCCTGCTTGGGCATAAACGCATCGCGCAAATCTCCGGCCCATCGTC
TGCGGTGCTGTGTCAGTTCCGTCAGCAAGGTTACCAACAAGCACTACGACGTGCTGGCATCACCATGAACCCGGATTACT
GCGCGGAAGCCGAGTTCTCGTTCGCCGGTGGCACAGAGGCCATTCGCCAGTTGTTGGAGTTACCTGAACCACCGACAGCC
GTATTCTGCCACTGTGATACCATGGCAATTGGCGCCATTCAAGCAGCGAAAAAGCTTGGCCTACGCGTGCCACAAGATCT
CTCTGTGGTCGGTTTTGACGACATCCAATTTGCCCAGTACTGCGATCCGCCTCTGACCACCATCTCTCAGCCGCGCTATG
AAATTGGCCGTCAAGCCATGTTGATGATGCTCGAAGTGCTCAAAGGGCACGAGATCCACAGTGGCTCTCGCCTGCTCGAA
ACGCAACTGGTGATCCGTGGCAGCGCCGCGCCACCGAAAATGCGTTAA

Domains

Predicted by InterproScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-328)

Bacterial regulatory proteins, lacI family (LacI)

(3-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A099LPP6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

90.691

99.403

0.901
  cytR Vibrio cholerae C6706

87.761

100

0.878