Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   IF132_RS07725 Genome accession   NZ_CP061845
Coordinates   432833..434254 (+) Length   473 a.a.
NCBI ID   WP_039426162.1    Uniprot ID   -
Organism   Vibrio navarrensis strain 2540-90     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 427833..439254
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IF132_RS07700 (IF132_08780) cobC 428847..429506 (-) 660 WP_039426171.1 alpha-ribazole phosphatase family protein -
  IF132_RS07705 (IF132_08785) cobU 429499..430047 (-) 549 WP_039426169.1 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase -
  IF132_RS07710 (IF132_08790) - 430056..430829 (-) 774 WP_039426167.1 adenosylcobinamide-GDP ribazoletransferase -
  IF132_RS07715 (IF132_08795) cobT 430830..431858 (-) 1029 WP_039426165.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -
  IF132_RS07720 (IF132_08800) - 431999..432697 (+) 699 WP_039426163.1 NAD(P)H-binding protein -
  IF132_RS07725 (IF132_08805) sbcB 432833..434254 (+) 1422 WP_039426162.1 exodeoxyribonuclease I Machinery gene
  IF132_RS07730 (IF132_08810) - 434303..434674 (+) 372 WP_039426160.1 CidA/LrgA family protein -
  IF132_RS07735 (IF132_08815) - 434676..435353 (+) 678 WP_039426158.1 LrgB family protein -
  IF132_RS07740 (IF132_08820) cdd 435635..436522 (+) 888 WP_039426156.1 cytidine deaminase -
  IF132_RS07745 (IF132_08825) purT 436657..437832 (+) 1176 WP_039426154.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  IF132_RS07750 (IF132_08830) - 437912..438565 (-) 654 WP_039426151.1 thiopurine S-methyltransferase -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 54672.88 Da        Isoelectric Point: 5.0893

>NTDB_id=485025 IF132_RS07725 WP_039426162.1 432833..434254(+) (sbcB) [Vibrio navarrensis strain 2540-90]
MHQDNQPTFFFFDYETWGVSPAKDRPSQFAGVRTDENFNVIGEPLVIYCRLPSDYLPAPEAALITGITPQKAMQEGLSEP
EFISKIHAELSKPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVMRACHALRPEGITWPENDEGFT
SFKLEHLSVANGIEHSNAHDAMADVIATIEMAKKLKAAQPKLFDYFFNMRHKRKLNALIDIVNMTPLMHVSGMLGRECQY
TSWVVPLAWHPTNNNAVIVIDLAKDPQPLFELSAEQLHERLYTKREDLDDLLPVPVKLVHLNKCPILAPAKTLTAENAAN
IGIDREQCLANLAQIRQHPEVREKLVQLFSIEREFADSDDVDSKLYDGFFSPADRAAMDIIRQTEPNNLAALDITFNDKR
IDPLLFRYRARNYPWTLDESEQRRWANHCREYFESRIEEYMLNLENLVHEHESDEKKIAILKSVYRYTESLIS

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=485025 IF132_RS07725 WP_039426162.1 432833..434254(+) (sbcB) [Vibrio navarrensis strain 2540-90]
ATGCACCAGGATAATCAGCCTACATTCTTCTTCTTTGATTATGAAACTTGGGGAGTAAGCCCCGCTAAAGACCGTCCTTC
CCAGTTTGCAGGGGTACGCACCGACGAAAATTTCAATGTGATTGGCGAGCCGCTGGTTATCTACTGCCGATTGCCAAGCG
ACTATCTTCCTGCGCCAGAAGCGGCCTTGATTACCGGCATTACCCCGCAAAAAGCGATGCAAGAGGGGCTGTCTGAGCCC
GAATTTATTAGCAAAATCCATGCAGAGCTGTCAAAACCCAACACCACTAGCCTTGGCTACAACAGCATTCGTTTTGACGA
TGAAGTCACTCGCTATACTTGTTATCGCAACTTCATTGATCCTTATGCGTGGAGCTGGCAAAACGGCAACTCGCGCTGGG
ATCTGCTGGATGTGATGCGCGCTTGTCACGCCCTTCGCCCAGAAGGCATTACTTGGCCGGAAAATGATGAGGGCTTTACC
AGCTTCAAATTGGAGCATCTGTCCGTCGCCAACGGCATAGAACACAGCAACGCGCACGATGCGATGGCCGATGTCATTGC
CACGATTGAGATGGCCAAAAAGCTCAAAGCGGCCCAGCCGAAACTGTTTGATTACTTTTTCAACATGCGCCACAAACGTA
AGCTGAATGCGCTGATTGATATCGTCAACATGACCCCCTTGATGCATGTATCCGGTATGCTTGGCCGTGAATGTCAGTAC
ACCAGTTGGGTGGTACCTTTGGCGTGGCATCCGACCAATAATAACGCAGTGATCGTGATCGATTTGGCGAAAGATCCACA
GCCACTGTTTGAGCTAAGCGCTGAGCAGTTACACGAACGCCTTTACACCAAGCGAGAAGATCTTGACGATCTGCTGCCAG
TGCCGGTGAAATTGGTGCATCTCAACAAATGCCCCATTTTAGCGCCCGCGAAAACGCTGACAGCAGAAAATGCGGCGAAT
ATTGGTATTGATCGCGAGCAGTGTTTGGCCAACCTAGCGCAGATCCGTCAACACCCAGAAGTGCGGGAAAAGTTGGTGCA
ACTTTTTTCCATTGAACGCGAATTTGCCGATAGTGACGATGTCGACAGTAAATTGTACGACGGTTTCTTCTCACCAGCCG
ATCGCGCCGCGATGGATATTATTCGTCAAACCGAGCCAAACAACCTCGCTGCGCTCGACATCACCTTTAACGACAAGCGC
ATTGATCCTCTGCTGTTTCGTTATCGTGCGCGTAACTATCCGTGGACATTAGATGAGAGCGAACAACGTCGCTGGGCCAA
CCATTGCCGAGAGTACTTCGAAAGTCGTATTGAAGAGTACATGCTCAATTTGGAAAACTTGGTGCATGAGCACGAAAGCG
ATGAAAAGAAAATAGCGATATTGAAATCGGTTTACCGCTATACTGAGAGCTTGATCTCATAA

Domains

Predicted by InterproScan.

Exonuclease C-terminal (Exonuc_X-T_C)

(210-469)

Exonuclease (RNase_T)

(11-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

81.144

99.789

0.81