Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimT   Type   Machinery gene
Locus tag   IF130_RS03485 Genome accession   NZ_CP061840
Coordinates   738634..739341 (-) Length   235 a.a.
NCBI ID   WP_010946369.1    Uniprot ID   Q5ZXU9
Organism   Legionella pneumophila subsp. pneumophila strain AW-13-4     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 733634..744341
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IF130_RS03470 (IF130_03470) - 736509..737021 (-) 513 WP_010946366.1 pilus assembly protein -
  IF130_RS03475 (IF130_03475) - 737018..738085 (-) 1068 WP_010946367.1 PilW family protein -
  IF130_RS03480 (IF130_03480) pilV 738082..738621 (-) 540 WP_010946368.1 type IV pilus modification protein PilV -
  IF130_RS03485 (IF130_03485) fimT 738634..739341 (-) 708 WP_010946369.1 GspH/FimT family pseudopilin Machinery gene
  IF130_RS03490 (IF130_03490) - 739563..740423 (-) 861 WP_011213225.1 polysaccharide deacetylase family protein -
  IF130_RS03495 (IF130_03495) - 740600..741949 (-) 1350 WP_010946371.1 lpg0634 family Dot/Icm T4SS effector -
  IF130_RS03500 (IF130_03500) - 742237..743718 (+) 1482 WP_010946372.1 phospholipid carrier-dependent glycosyltransferase -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 24868.47 Da        Isoelectric Point: 7.0384

>NTDB_id=484960 IF130_RS03485 WP_010946369.1 738634..739341(-) (fimT) [Legionella pneumophila subsp. pneumophila strain AW-13-4]
MNKVITESQKFTLRNIANMLFCVESSVLPAQSNIAQKIQTQGIMYNDLCKDSFDTEAPLNSNPLSIAGFTLVELLVTLSV
FAIILTLIVPSLRTMILNSRLTSNIDSLVSSLNYARGVALDRAVNVAVCPLGSPGSTACGANWSSGWIVVTQPVAGAPTL
LKSHQTSVNDPVITSNVSSVVFDPHGLSTTQSNFTMCDNRGNAFARSAMVLATGFVQSGTTPGQAVWNNGALNCP

Nucleotide


Download         Length: 708 bp        

>NTDB_id=484960 IF130_RS03485 WP_010946369.1 738634..739341(-) (fimT) [Legionella pneumophila subsp. pneumophila strain AW-13-4]
TTGAACAAAGTGATAACGGAATCACAAAAATTCACTCTGCGCAACATAGCTAATATGTTATTTTGCGTTGAGAGTAGTGT
GTTGCCCGCACAATCTAATATAGCACAAAAGATACAAACACAAGGCATAATGTACAATGATCTTTGTAAAGACAGCTTCG
ATACTGAGGCCCCTCTTAACAGCAACCCTCTTTCCATAGCCGGATTCACACTGGTTGAATTATTAGTAACCCTATCTGTT
TTTGCCATCATCTTAACTCTAATCGTCCCTTCATTAAGAACTATGATTTTGAATAGCCGTTTGACTTCAAACATTGACTC
ACTGGTAAGCTCATTAAACTATGCGCGTGGAGTGGCACTTGATCGGGCAGTCAATGTGGCAGTATGCCCATTAGGTTCAC
CAGGTTCAACGGCCTGTGGAGCCAACTGGAGCTCAGGATGGATAGTAGTGACCCAACCAGTAGCAGGAGCACCAACGCTT
TTAAAATCGCACCAGACTTCAGTGAATGATCCTGTTATCACTTCGAACGTATCCAGTGTTGTTTTTGACCCACATGGGTT
ATCAACAACCCAAAGTAACTTCACTATGTGTGATAACAGAGGCAATGCGTTTGCCCGCTCGGCAATGGTTTTGGCCACTG
GATTTGTCCAATCCGGAACAACACCCGGCCAAGCAGTCTGGAATAATGGAGCTTTGAACTGCCCTTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(67-88)

Type II transport protein GspH (GspH)

(106-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5ZXU9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimT Legionella pneumophila strain Lp02

100

100

1