Detailed information    

insolico Bioinformatically predicted

Overview

Name   rocC   Type   Regulator
Locus tag   IF130_RS00755 Genome accession   NZ_CP061840
Coordinates   165048..165740 (+) Length   230 a.a.
NCBI ID   WP_011212783.1    Uniprot ID   -
Organism   Legionella pneumophila subsp. pneumophila strain AW-13-4     
Function   rocR chaperone; repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 160048..170740
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IF130_RS00735 (IF130_00735) - 160669..160845 (-) 177 WP_011212779.1 dodecin domain-containing protein -
  IF130_RS00740 (IF130_00740) - 161023..163491 (+) 2469 WP_011212780.1 hypothetical protein -
  IF130_RS00745 (IF130_00745) dapB 163595..164326 (-) 732 WP_011212781.1 4-hydroxy-tetrahydrodipicolinate reductase -
  IF130_RS00750 (IF130_00750) - 164506..164691 (-) 186 WP_011212782.1 hypothetical protein -
  IF130_RS00755 (IF130_00755) rocC 165048..165740 (+) 693 WP_011212783.1 ProQ/FinO family protein Regulator
  IF130_RS00760 (IF130_00760) - 165741..166811 (+) 1071 WP_011212784.1 hypothetical protein -

Sequence

Protein


Download         Length: 230 a.a.        Molecular weight: 25773.65 Da        Isoelectric Point: 10.6563

>NTDB_id=484954 IF130_RS00755 WP_011212783.1 165048..165740(+) (rocC) [Legionella pneumophila subsp. pneumophila strain AW-13-4]
MRKQALHPRTAVINKAQKNQSKRARSDALLWLAANFPEAFDNSLRIRPLKIGIMSDILQHAEKAEQVGVSKSKLREAVVL
FTRRLDYLACLKAREVRIDLHGNPVAEVTEEEAENASMKIKKRVEKSVKNARKQVNAKAANHSYVNNQPSTVSSVKPMNS
FDSHPEPLLPIYPLRSSTYASQNVAMQSAKSPSVVVKHKAPKQYDPDAVARLKEKLGLSRKAEDKKETTE

Nucleotide


Download         Length: 693 bp        

>NTDB_id=484954 IF130_RS00755 WP_011212783.1 165048..165740(+) (rocC) [Legionella pneumophila subsp. pneumophila strain AW-13-4]
ATGAGAAAGCAGGCGCTGCACCCACGAACCGCTGTCATCAATAAAGCACAAAAAAATCAATCCAAGCGCGCGCGATCTGA
CGCATTATTATGGCTTGCGGCTAATTTCCCTGAGGCATTCGATAATTCTTTGCGTATTCGGCCATTAAAGATTGGTATTA
TGTCTGATATATTGCAGCATGCAGAAAAAGCAGAGCAAGTTGGAGTTTCTAAAAGCAAATTAAGGGAAGCTGTTGTTCTT
TTTACCCGTCGTCTTGATTATCTGGCTTGCCTGAAAGCTCGTGAAGTCCGTATCGATTTGCATGGAAATCCAGTAGCGGA
GGTTACTGAGGAAGAAGCGGAGAATGCTTCCATGAAAATTAAAAAACGCGTGGAAAAGAGTGTTAAAAATGCTCGCAAAC
AAGTGAATGCAAAAGCGGCTAATCATTCATATGTAAATAATCAGCCAAGTACAGTTTCCAGCGTTAAGCCAATGAATTCG
TTTGACTCTCATCCTGAGCCTCTTTTGCCAATATATCCTCTCAGAAGCTCTACCTATGCCTCACAAAATGTGGCAATGCA
ATCCGCCAAGTCACCATCCGTAGTAGTCAAACATAAAGCACCAAAGCAATATGATCCGGATGCTGTAGCTCGTTTAAAAG
AAAAATTAGGATTGTCTCGAAAAGCAGAAGATAAAAAGGAAACAACAGAGTAA

Domains

Predicted by InterProScan.

ProQ/FINO family (ProQ)

(26-132)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rocC Legionella pneumophila str. Paris

100

100

1