Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   J9247_RS27745 Genome accession   NZ_CP072783
Coordinates   5955695..5956219 (-) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain LICME WGH-6     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5950695..5961219
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J9247_RS27730 (J9247_27730) aroB 5951811..5952917 (-) 1107 WP_033977028.1 3-dehydroquinate synthase -
  J9247_RS27735 (J9247_27735) aroK 5952967..5953485 (-) 519 WP_003095833.1 shikimate kinase AroK -
  J9247_RS27740 (J9247_27740) pilQ 5953497..5955641 (-) 2145 WP_121358471.1 type 4a pilus secretin PilQ Machinery gene
  J9247_RS27745 (J9247_27745) comL/pilP 5955695..5956219 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  J9247_RS27750 (J9247_27750) pilO 5956216..5956839 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  J9247_RS27755 (J9247_27755) pilN 5956836..5957432 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  J9247_RS27760 (J9247_27760) pilM 5957432..5958496 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  J9247_RS27765 (J9247_27765) - 5958681..5961152 (+) 2472 WP_033967771.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=484942 J9247_RS27745 WP_003095836.1 5955695..5956219(-) (comL/pilP) [Pseudomonas aeruginosa strain LICME WGH-6]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=484942 J9247_RS27745 WP_003095836.1 5955695..5956219(-) (comL/pilP) [Pseudomonas aeruginosa strain LICME WGH-6]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGACCCAAGGGCACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCTT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGACGAGACTCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362