Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   IE337_RS01455 Genome accession   NZ_CP061835
Coordinates   298901..300277 (+) Length   458 a.a.
NCBI ID   WP_191136858.1    Uniprot ID   -
Organism   Weissella viridescens strain NJ100     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 293901..305277
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IE337_RS01430 (IE337_01430) - 294264..296408 (+) 2145 WP_191136520.1 ATP-dependent Clp protease ATP-binding subunit -
  IE337_RS07905 (IE337_01435) - 296696..297358 (+) 663 WP_191136521.1 CHAP domain-containing protein -
  IE337_RS01440 (IE337_01440) - 297433..297975 (+) 543 WP_191136522.1 NlpC/P60 family protein -
  IE337_RS01445 (IE337_01445) - 297990..298274 (+) 285 WP_191136523.1 GNAT family N-acetyltransferase -
  IE337_RS01450 (IE337_01450) - 298349..298891 (+) 543 WP_191136524.1 dUTP diphosphatase -
  IE337_RS01455 (IE337_01455) radA 298901..300277 (+) 1377 WP_191136858.1 DNA repair protein RadA Machinery gene
  IE337_RS01460 (IE337_01460) - 300294..301400 (+) 1107 WP_191136525.1 PIN domain-containing protein -
  IE337_RS01465 (IE337_01465) gltX 301475..302971 (+) 1497 WP_057745425.1 glutamate--tRNA ligase -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 49980.05 Da        Isoelectric Point: 5.0934

>NTDB_id=484934 IE337_RS01455 WP_191136858.1 298901..300277(+) (radA) [Weissella viridescens strain NJ100]
MAKAKTQFVCSNCGNVSQRYMGRCPSCGAWGTLVEEVQQPEKADRKSRVNLAGQTAKVERLDEVDIEETPRILTQSEEFN
RVLGGGIVPGSLVLIGGDPGIGKSTLLLQISGDLSSHGQRVLYVSGEESASQIKLRAERLGVQGDAEFYLYPETDMSAIR
KAIDESKPDFVVIDSIQTMQQPDISSAIGSVAQIRETTAELLQIAKTNGITIFIVGHVTKEGAIAGPKILEHMVDTVLYF
EGDNQRSYRLLRAAKNRFGSTNELGVFEMVHEGLSEVKNPSEMFLEERLEHASGSAVVVALEGTRPVLVEVQALVTPTVF
GNAQRTASGIDRNRVSVLMAVLEKRANLLMQNEDAYVRAAGGVKLEEPGIDLALAVAIASSYRDKETRVGDAFVGEIGLT
GEIRRVPRMLDRILEAQKLGFKRVFVPQKALERKQDEITDIEVVSVKTLADALQRALD

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=484934 IE337_RS01455 WP_191136858.1 298901..300277(+) (radA) [Weissella viridescens strain NJ100]
ATGGCGAAGGCAAAAACGCAGTTTGTGTGTTCAAACTGTGGTAATGTTTCGCAACGCTACATGGGACGTTGTCCTTCATG
TGGTGCTTGGGGAACCTTGGTGGAAGAAGTACAGCAACCAGAAAAAGCAGACCGTAAGTCGCGTGTTAACTTAGCAGGAC
AAACGGCAAAAGTTGAACGACTTGATGAAGTCGATATCGAAGAAACGCCACGCATCTTAACACAATCAGAAGAATTTAAT
CGTGTCCTAGGTGGTGGGATTGTGCCGGGGTCACTTGTCTTAATTGGTGGTGACCCTGGAATTGGAAAGTCAACATTGTT
GCTTCAAATTTCAGGTGACTTATCAAGCCATGGTCAGCGTGTTCTATACGTTTCAGGTGAGGAAAGTGCATCGCAGATTA
AACTTCGAGCAGAACGGCTAGGGGTTCAAGGGGATGCAGAATTTTATTTGTATCCAGAGACGGACATGTCAGCTATCCGT
AAAGCGATTGATGAATCTAAACCCGATTTCGTCGTGATTGACTCGATTCAAACGATGCAACAACCTGATATTAGTTCGGC
CATTGGGTCCGTTGCCCAAATTCGTGAAACCACGGCGGAGCTCTTGCAAATTGCCAAGACGAATGGCATTACCATTTTTA
TTGTCGGTCACGTGACCAAAGAAGGGGCGATTGCAGGGCCGAAAATTTTGGAACACATGGTGGATACGGTTTTGTATTTC
GAAGGTGATAATCAACGTAGTTACCGGTTGTTGCGAGCGGCTAAAAATCGTTTCGGTTCAACTAATGAATTAGGTGTGTT
TGAAATGGTGCATGAAGGTTTGAGTGAAGTGAAAAATCCTTCAGAAATGTTCTTGGAAGAACGGTTAGAGCATGCGAGCG
GATCAGCTGTTGTCGTTGCCTTAGAAGGAACGCGGCCAGTCTTGGTGGAAGTGCAAGCCTTGGTGACACCGACGGTTTTT
GGTAATGCACAACGTACGGCCTCTGGGATTGATCGCAATCGTGTTTCAGTTTTGATGGCTGTGTTGGAGAAGCGGGCCAA
TTTGTTGATGCAAAATGAGGATGCCTATGTCCGTGCGGCTGGAGGCGTAAAACTTGAGGAACCAGGGATTGATTTGGCCT
TAGCTGTTGCAATTGCATCAAGTTATCGTGATAAAGAAACTCGTGTGGGAGACGCCTTTGTTGGTGAAATTGGGTTGACT
GGTGAAATTCGTCGAGTACCGCGGATGCTTGACCGTATCTTGGAAGCGCAAAAATTGGGATTCAAGCGTGTTTTTGTACC
ACAAAAAGCCCTTGAAAGAAAACAAGACGAAATTACGGATATCGAAGTTGTCAGTGTTAAAACGCTCGCCGATGCATTGC
AGCGGGCGCTAGATTAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(69-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(363-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae D39

61.957

100

0.622
  radA Streptococcus pneumoniae Rx1

61.957

100

0.622
  radA Streptococcus pneumoniae R6

61.957

100

0.622
  radA Streptococcus pneumoniae TIGR4

61.957

100

0.622
  radA Streptococcus mitis NCTC 12261

61.926

99.782

0.618
  radA Streptococcus mitis SK321

61.926

99.782

0.618
  radA Bacillus subtilis subsp. subtilis str. 168

58.734

100

0.587