Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   J9247_RS23565 Genome accession   NZ_CP072783
Coordinates   5062466..5063908 (-) Length   480 a.a.
NCBI ID   WP_210224812.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain LICME WGH-6     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5057466..5068908
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J9247_RS23535 (J9247_23535) - 5057792..5058907 (+) 1116 WP_003110035.1 glycosyltransferase family 1 protein -
  J9247_RS23540 (J9247_23540) - 5058900..5059661 (+) 762 WP_033973700.1 DUF2334 domain-containing protein -
  J9247_RS23545 (J9247_23545) - 5059658..5060659 (+) 1002 WP_039028229.1 lysylphosphatidylglycerol synthase transmembrane domain-containing protein -
  J9247_RS23550 (J9247_23550) - 5060634..5060846 (-) 213 WP_003115238.1 hypothetical protein -
  J9247_RS23555 (J9247_23555) purU 5060896..5061747 (-) 852 WP_003101174.1 formyltetrahydrofolate deformylase -
  J9247_RS23560 (J9247_23560) mvaT 5062007..5062381 (+) 375 WP_003093888.1 histone-like nucleoid-structuring protein MvaT -
  J9247_RS23565 (J9247_23565) sbcB 5062466..5063908 (-) 1443 WP_210224812.1 exodeoxyribonuclease I Machinery gene
  J9247_RS23570 (J9247_23570) - 5064133..5064870 (+) 738 WP_128667349.1 hypothetical protein -
  J9247_RS23575 (J9247_23575) - 5064908..5065705 (+) 798 WP_073649448.1 RDD family protein -
  J9247_RS23580 (J9247_23580) - 5065702..5066682 (+) 981 WP_033973694.1 stage II sporulation protein M -
  J9247_RS23585 (J9247_23585) - 5066669..5068237 (+) 1569 WP_057388102.1 DUF4129 domain-containing protein -

Sequence

Protein


Download         Length: 480 a.a.        Molecular weight: 55457.79 Da        Isoelectric Point: 5.4256

>NTDB_id=484923 J9247_RS23565 WP_210224812.1 5062466..5063908(-) (sbcB) [Pseudomonas aeruginosa strain LICME WGH-6]
MTVNASIFWYDYETTGIDPRRDRPLQIAGIRTDEALNEIGEPMNLYCRPSDDILPHPMACLITGITPQRLAERGLSEADF
MTRVHAQLAQPATCVAGYNSLRFDDEVTRYSLYRNFFDPYAREWQGGNSRWDLIDMVRTAYALRPEGIQWPEVDGRVSLK
LELLTAANGLEHGQAHDALSDVRATIALARLIRQRQPRLYDYLYQLRSKHKVLDQVRLLQPLVHVSGRFSAERHFLSVVL
PLAWHPRNRNALIVCDLCAEPAPLLELSAEELRRRLYTRRDELAEGELPVPLKQIQVNRCPVVAPLSVLRVEDRQRTGIE
LEECQRKAELLRQHQTVWADKLAALYGEESFSASDDPEQQLYDGFIGDRDRRLCEQLRLAEPEQLAKEQWPFDDARLQEL
FFRYRARNFPETLNVAERQQWESFCRNRLSHEEYGAPNTLPAFEAALEACRQELGGTLPAVLAAWRDYAAELRQRYSLET

Nucleotide


Download         Length: 1443 bp        

>NTDB_id=484923 J9247_RS23565 WP_210224812.1 5062466..5063908(-) (sbcB) [Pseudomonas aeruginosa strain LICME WGH-6]
ATGACCGTGAACGCGAGTATTTTTTGGTACGACTACGAAACCACCGGCATCGACCCCCGCCGCGACCGGCCGTTGCAGAT
CGCCGGGATCCGCACGGACGAGGCGCTGAACGAGATCGGCGAGCCGATGAACCTGTATTGCCGTCCCAGCGACGATATCC
TGCCTCACCCTATGGCTTGCCTGATCACCGGCATCACCCCGCAGCGGCTGGCCGAGCGGGGGCTGTCCGAGGCCGACTTC
ATGACCCGGGTACACGCCCAGCTGGCGCAGCCGGCGACCTGCGTGGCCGGCTACAACTCCCTGCGCTTCGACGACGAAGT
GACGCGCTACAGCCTGTACCGCAACTTCTTCGATCCCTACGCCCGCGAGTGGCAAGGCGGCAATAGCCGCTGGGACCTGA
TCGACATGGTCCGTACCGCTTATGCCCTGCGCCCGGAGGGCATCCAGTGGCCGGAGGTGGATGGCCGCGTCTCGCTGAAG
CTGGAGCTGCTCACCGCGGCGAATGGCCTGGAACATGGCCAGGCCCACGACGCGCTGTCCGATGTTCGCGCGACCATCGC
CCTGGCCCGCCTGATCCGTCAGCGCCAGCCGCGCCTGTACGATTACCTCTACCAGTTGCGCAGCAAGCACAAGGTGCTCG
ACCAGGTCCGCCTGCTGCAGCCGCTGGTGCATGTCTCCGGGCGCTTTTCCGCGGAGCGCCATTTCCTCTCGGTGGTCCTG
CCGCTGGCCTGGCACCCGCGCAACCGCAATGCCCTGATCGTCTGCGACCTGTGTGCCGAGCCCGCACCGCTGCTGGAACT
GTCCGCCGAGGAGCTGCGCCGGCGCCTGTATACCCGTCGCGACGAACTGGCCGAGGGCGAGTTGCCGGTGCCGCTGAAGC
AGATCCAGGTCAACCGTTGCCCGGTGGTGGCGCCGCTGTCGGTATTGCGCGTCGAGGATCGCCAGCGAACCGGCATCGAA
CTCGAGGAGTGCCAGCGAAAAGCCGAGCTGTTGCGCCAGCATCAAACCGTCTGGGCGGACAAACTGGCAGCGCTATATGG
CGAAGAAAGTTTCTCCGCCAGCGACGACCCCGAACAACAGTTGTATGACGGATTTATTGGTGATCGGGATCGACGCCTTT
GTGAACAGCTGCGCCTTGCCGAACCGGAGCAATTGGCCAAAGAACAATGGCCCTTCGACGATGCCCGCTTGCAGGAGTTG
TTCTTCCGTTATCGTGCGCGAAATTTCCCGGAAACTTTAAATGTGGCCGAGCGCCAACAATGGGAAAGCTTCTGCCGCAA
TCGTTTGTCCCATGAAGAATACGGCGCACCGAATACTTTGCCGGCCTTCGAGGCGGCGCTGGAGGCTTGTCGGCAAGAGC
TGGGCGGCACATTGCCGGCGGTACTTGCGGCCTGGCGCGATTACGCCGCGGAACTGCGTCAACGCTATTCGCTGGAGACT
TGA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(207-470)

Exonuclease (RNase_T)

(9-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

49.531

88.75

0.44