Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   J9247_RS20315 Genome accession   NZ_CP072783
Coordinates   4373579..4373908 (-) Length   109 a.a.
NCBI ID   WP_058179065.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain LICME WGH-6     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4368579..4378908
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J9247_RS20300 (J9247_20300) uvrB 4369966..4371978 (-) 2013 WP_003104590.1 excinuclease ABC subunit UvrB Machinery gene
  J9247_RS20305 (J9247_20305) - 4372166..4373362 (+) 1197 WP_003104588.1 amino acid aminotransferase -
  J9247_RS20315 (J9247_20315) comEA/comE1 4373579..4373908 (-) 330 WP_058179065.1 ComEA family DNA-binding protein Machinery gene
  J9247_RS20320 (J9247_20320) - 4374099..4376096 (-) 1998 WP_057388198.1 nucleoside-diphosphate sugar epimerase/dehydratase -
  J9247_RS20325 (J9247_20325) - 4376281..4377318 (-) 1038 WP_058017424.1 glycosyltransferase family 4 protein -
  J9247_RS20330 (J9247_20330) - 4377318..4378280 (-) 963 WP_058017412.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11337.28 Da        Isoelectric Point: 8.0459

>NTDB_id=484915 J9247_RS20315 WP_058179065.1 4373579..4373908(-) (comEA/comE1) [Pseudomonas aeruginosa strain LICME WGH-6]
MHLIKSALLLILFACLPFSASAAPVAVAKNPLAATTPAATVSPGEQVNINTVDEAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRSRIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=484915 J9247_RS20315 WP_058179065.1 4373579..4373908(-) (comEA/comE1) [Pseudomonas aeruginosa strain LICME WGH-6]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGCCGT
CGCCAAGAATCCGCTGGCCGCAACGACACCTGCGGCGACCGTGTCGCCGGGGGAACAGGTCAATATCAACACGGTCGACG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAAGGGGTAGGCCCGGCGTTGCTGGAGAAAAACCGGTCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

41.346

95.413

0.394