Detailed information NTG0484882

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: J9247_RS07235
• Genome accession: NZ_CP072783
• Coordinates: 1566125..1567129 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain LICME WGH-6
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1561125..1572129

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J9247_RS07205 (J9247_07205)	fghA	1561217..1562068 (+)	852	WP_058016870.1	S-formylglutathione hydrolase	-
J9247_RS07210 (J9247_07210)	ispF	1562139..1562612 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
J9247_RS07215 (J9247_07215)	truD	1562609..1563676 (+)	1068	WP_083557276.1	tRNA pseudouridine(13) synthase TruD	-
J9247_RS07220 (J9247_07220)	surE	1563664..1564413 (+)	750	WP_033975657.1	5'/3'-nucleotidase SurE	-
J9247_RS07225 (J9247_07225)	-	1564446..1565081 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
J9247_RS07230 (J9247_07230)	-	1565127..1566020 (+)	894	WP_033974347.1	peptidoglycan DD-metalloendopeptidase family protein	-
J9247_RS07235 (J9247_07235)	rpoS	1566125..1567129 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
J9247_RS07240 (J9247_07240)	fdxA	1567556..1567879 (-)	324	WP_003092272.1	ferredoxin FdxA	-
J9247_RS07245 (J9247_07245)	mutS	1567946..1570513 (-)	2568	WP_071546755.1	DNA mismatch repair protein MutS	-
J9247_RS07250 (J9247_07250)	-	1570648..1571655 (-)	1008	WP_033974397.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=484882 J9247_RS07235 WP_003113871.1 1566125..1567129(+) (rpoS) [Pseudomonas aeruginosa strain LICME WGH-6]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=484882 J9247_RS07235 WP_003113871.1 1566125..1567129(+) (rpoS) [Pseudomonas aeruginosa strain LICME WGH-6]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATCCGTTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGCCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAACGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653