Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   J9247_RS02120 Genome accession   NZ_CP072783
Coordinates   447188..447553 (+) Length   121 a.a.
NCBI ID   WP_003084587.1    Uniprot ID   A0A0H2ZKW2
Organism   Pseudomonas aeruginosa strain LICME WGH-6     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 442188..452553
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J9247_RS02090 (J9247_02090) pyrR 442810..443322 (-) 513 WP_121200543.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  J9247_RS02095 (J9247_02095) ruvX 443434..443868 (-) 435 WP_003084575.1 Holliday junction resolvase RuvX -
  J9247_RS02100 (J9247_02100) - 443868..444437 (-) 570 WP_210224919.1 YqgE/AlgH family protein -
  J9247_RS02105 (J9247_02105) - 444486..445379 (-) 894 WP_003084580.1 TonB family protein -
  J9247_RS02110 (J9247_02110) gshB 445526..446479 (-) 954 WP_003100943.1 glutathione synthase -
  J9247_RS02115 (J9247_02115) pilG 446734..447141 (+) 408 WP_003084583.1 twitching motility response regulator PilG Regulator
  J9247_RS02120 (J9247_02120) pilH 447188..447553 (+) 366 WP_003084587.1 twitching motility response regulator PilH Machinery gene
  J9247_RS02125 (J9247_02125) - 447604..448140 (+) 537 WP_003084590.1 chemotaxis protein CheW -
  J9247_RS02130 (J9247_02130) pilJ 448225..450273 (+) 2049 WP_003084592.1 chemotaxis chemoreceptor PilJ -
  J9247_RS02135 (J9247_02135) pilK 450334..451209 (+) 876 WP_003084594.1 type 4 fimbrial methyltransferase PilK -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13273.30 Da        Isoelectric Point: 5.1961

>NTDB_id=484870 J9247_RS02120 WP_003084587.1 447188..447553(+) (pilH) [Pseudomonas aeruginosa strain LICME WGH-6]
MARILIVDDSPTEMYKLTAMLEKHGHQVLKAENGGDGVALARQEKPDVVLMDIVMPGLNGFQATRQLTKDAETSAIPVII
VTTKDQETDKVWGKRQGARDYLTKPVDEETLLKTINAVLAG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=484870 J9247_RS02120 WP_003084587.1 447188..447553(+) (pilH) [Pseudomonas aeruginosa strain LICME WGH-6]
ATGGCTCGTATTTTGATTGTTGATGACTCTCCGACCGAGATGTACAAGCTGACCGCCATGCTGGAAAAGCATGGCCACCA
GGTACTCAAGGCCGAGAACGGCGGCGACGGCGTCGCCCTGGCCCGCCAGGAAAAGCCCGACGTGGTCCTGATGGACATCG
TCATGCCCGGCCTCAACGGCTTCCAGGCGACCCGTCAGTTGACCAAGGACGCCGAGACCAGCGCCATCCCGGTGATCATC
GTCACCACCAAGGACCAGGAGACCGACAAGGTCTGGGGCAAGCGCCAGGGCGCGCGCGACTACCTGACCAAGCCGGTGGA
CGAAGAGACCCTGCTGAAAACCATCAATGCGGTGCTGGCGGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZKW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

36.975

98.347

0.364