Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   J9247_RS01935 Genome accession   NZ_CP072783
Coordinates   414638..415987 (+) Length   449 a.a.
NCBI ID   WP_121289593.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain LICME WGH-6     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 409638..420987
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J9247_RS01915 (J9247_01915) - 410475..411041 (-) 567 WP_033974084.1 hypothetical protein -
  J9247_RS01920 (J9247_01920) rsmD 411044..411640 (-) 597 WP_003102864.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  J9247_RS01925 (J9247_01925) - 411640..413127 (-) 1488 WP_033974085.1 pitrilysin family protein -
  J9247_RS01930 (J9247_01930) - 413120..414517 (-) 1398 WP_073649045.1 pitrilysin family protein -
  J9247_RS01935 (J9247_01935) pilA 414638..415987 (+) 1350 WP_121289593.1 signal recognition particle-docking protein FtsY Machinery gene
  J9247_RS01940 (J9247_01940) ftsE 415984..416655 (+) 672 WP_003084505.1 cell division ATP-binding protein FtsE -
  J9247_RS01945 (J9247_01945) ftsX 416655..417662 (+) 1008 WP_033974094.1 permease-like cell division protein FtsX -
  J9247_RS01950 (J9247_01950) rpoH 417776..418630 (+) 855 WP_003084510.1 RNA polymerase sigma factor RpoH -
  J9247_RS01955 (J9247_01955) - 418695..419300 (+) 606 WP_057387708.1 hypothetical protein -
  J9247_RS01960 (J9247_01960) mtgA 419305..420036 (-) 732 WP_079752026.1 monofunctional biosynthetic peptidoglycan transglycosylase -
  J9247_RS01965 (J9247_01965) - 420073..420450 (+) 378 WP_033974098.1 DUF423 domain-containing protein -
  J9247_RS01970 (J9247_01970) thiS 420553..420753 (+) 201 WP_003084514.1 sulfur carrier protein ThiS -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 47685.11 Da        Isoelectric Point: 4.6393

>NTDB_id=484866 J9247_RS01935 WP_121289593.1 414638..415987(+) (pilA) [Pseudomonas aeruginosa strain LICME WGH-6]
MFGSNDDKKAPQGGEKKGLFGWWRKKPQAGEQPADQPVEPVSETSAAEQRAPADDVAQSLTEQPGRQQPSAAEPAEPPAP
VAEAPLAGDGPVSAEEHSPRPEAPVAQPEPILAAEPEPEPEPEPVAPLAAAPAVSEPATRPGFFARLRQGLSKTSASIGE
GMASLFLGRKEIDDDLLDDIETRLLTADVGVEATTLIVQNLTKRVARKELADSGALYKALQEELASLLRPVEQPLQVDVA
REPYVILVVGVNGVGKTTTIGKLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNRIPVIAQHTGADSASVIFDAVQA
AKARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDETAPHEVLLVLDAGTGQNAINQAKQFNLAVELTGLALTKLDG
TAKGGVIFALAKQFGLPIRYIGVGEGIDDLRTFEADAFVQALFAERENA

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=484866 J9247_RS01935 WP_121289593.1 414638..415987(+) (pilA) [Pseudomonas aeruginosa strain LICME WGH-6]
ATGTTTGGTTCCAACGACGACAAGAAGGCCCCGCAGGGCGGGGAAAAGAAAGGTCTGTTCGGCTGGTGGCGGAAAAAGCC
GCAAGCCGGCGAGCAGCCTGCCGATCAGCCTGTCGAGCCGGTCTCCGAGACGTCGGCCGCCGAGCAGCGCGCGCCTGCCG
ATGATGTGGCGCAATCCCTGACAGAACAGCCAGGTCGGCAGCAGCCCTCCGCTGCCGAGCCGGCCGAGCCGCCGGCGCCG
GTTGCCGAAGCGCCGCTCGCCGGTGACGGGCCAGTGTCGGCCGAGGAGCATTCGCCCCGGCCCGAGGCGCCCGTCGCGCA
ACCCGAGCCTATCCTGGCTGCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGTTGCGCCGCTGGCCGCCGCTCCGGCAG
TCAGCGAGCCGGCGACCAGGCCGGGCTTCTTCGCCCGCCTCCGGCAGGGGCTGTCCAAGACCAGCGCCAGCATCGGCGAA
GGCATGGCCAGCCTGTTCCTCGGTCGCAAGGAAATCGACGACGACCTGCTCGACGACATCGAGACGCGCCTGCTGACCGC
CGACGTCGGCGTCGAGGCCACCACCCTGATCGTGCAGAACCTGACCAAGCGCGTGGCGCGCAAGGAGCTGGCCGACAGCG
GCGCGCTGTACAAGGCGCTGCAGGAAGAGCTGGCCAGCCTGCTGCGCCCGGTGGAGCAGCCGTTGCAGGTCGACGTCGCG
CGCGAGCCCTATGTGATCCTGGTGGTCGGGGTGAACGGCGTGGGCAAGACCACCACCATCGGCAAGCTGGCGAAGAAGCT
GCAACTCGAGGGCAAGAAGGTCATGCTGGCCGCCGGCGACACCTTCCGCGCTGCCGCCGTGGAGCAGTTGCAGGTCTGGG
GCGAGCGCAACCGCATCCCGGTGATCGCCCAGCACACCGGCGCCGACTCCGCCTCGGTGATCTTCGACGCGGTGCAGGCC
GCCAAGGCCCGCGGCATCGACGTGCTGATCGCCGATACCGCCGGACGCCTGCATACCAAGGACAACCTGATGGAGGAGCT
GAAGAAGGTGCGCCGGGTGATCGGCAAGCTGGACGAGACGGCGCCCCATGAGGTCCTGCTGGTGCTCGACGCCGGTACCG
GGCAGAACGCCATCAACCAGGCCAAGCAGTTCAACCTCGCGGTGGAGCTGACCGGCCTGGCCCTGACCAAACTGGACGGC
ACCGCCAAGGGCGGGGTGATCTTCGCCCTGGCCAAGCAGTTCGGCCTGCCGATCCGTTATATCGGTGTCGGCGAGGGGAT
CGACGATCTCCGTACCTTCGAGGCCGATGCCTTCGTCCAGGCACTCTTCGCAGAGCGGGAGAACGCATGA

Domains

Predicted by InterProScan.

SRP54-type protein, GTPase domain (SRP54)

(244-443)

SRP54-type protein, helical bundle domain (SRP54_N)

(159-224)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

47.564

95.991

0.457