Detailed information    

insolico Bioinformatically predicted

Overview

Name   comR   Type   Regulator
Locus tag   I872_RS00325 Genome accession   NC_021175
Coordinates   55917..56837 (+) Length   306 a.a.
NCBI ID   WP_015604204.1    Uniprot ID   A0ABN4B7N3
Organism   Streptococcus cristatus AS 1.3089     
Function   activate transcription of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 50917..61837
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I872_RS00320 (I872_00255) adhE 52991..55645 (+) 2655 WP_015604203.1 bifunctional acetaldehyde-CoA/alcohol dehydrogenase -
  I872_RS00325 (I872_00260) comR 55917..56837 (+) 921 WP_015604204.1 helix-turn-helix domain-containing protein Regulator
  I872_RS11240 (I872_00265) - 57025..57173 (+) 149 Protein_52 ABC transporter ATP-binding protein -
  I872_RS00330 (I872_00270) - 57227..57436 (+) 210 WP_015604206.1 hypothetical protein -
  I872_RS11975 - 57457..57606 (+) 150 WP_167320504.1 hypothetical protein -
  I872_RS11980 (I872_00275) - 57619..57765 (+) 147 WP_015604207.1 hypothetical protein -
  I872_RS00335 (I872_00280) - 58101..58697 (+) 597 Protein_56 transposase -
  I872_RS00340 (I872_00285) - 59164..60162 (+) 999 WP_015604209.1 acetylxylan esterase -
  I872_RS00345 (I872_00290) - 60421..61119 (+) 699 WP_015604210.1 N-acetylmannosamine-6-phosphate 2-epimerase -

Sequence

Protein


Download         Length: 306 a.a.        Molecular weight: 36106.36 Da        Isoelectric Point: 4.6322

>NTDB_id=48485 I872_RS00325 WP_015604204.1 55917..56837(+) (comR) [Streptococcus cristatus AS 1.3089]
MNNVGKRIEELRKQKGLSRPAFCDDESGLSVRQLARIEKGEFHPTLKTLEHIAEKLEIPAYILMPDYQELPERYKEIKYF
LLHHPDYGDKKLQEQKDAYFDEIFEDFYENLPRDEQIMIDCLQAIDQVRAGQNSLYGQGVLENSFDSLVDVEPFHTSTLL
KSRLYFLCALMDGLNSGFIKETTQEEIVLLFKKLCHQIEETELEDLYLLRDALFAALCCLELVGEFSYFKMAVDKLNYIM
NRTRDFQKKPLILMVEWKYYIQCDFNEANRKYKEAKMVAQIFGNEELITSLDGEWKEDIKNIFNNF

Nucleotide


Download         Length: 921 bp        

>NTDB_id=48485 I872_RS00325 WP_015604204.1 55917..56837(+) (comR) [Streptococcus cristatus AS 1.3089]
ATGAATAATGTTGGAAAAAGAATAGAAGAGTTGCGCAAACAAAAAGGTTTGAGCCGTCCGGCCTTTTGTGATGATGAGTC
TGGTTTGTCTGTCCGCCAGTTGGCACGTATCGAAAAAGGAGAGTTTCATCCCACTCTGAAAACTCTGGAGCATATTGCAG
AAAAATTGGAGATTCCAGCCTATATCCTCATGCCTGACTATCAAGAGCTGCCAGAGCGTTATAAGGAAATCAAGTATTTT
CTGCTTCATCACCCCGACTATGGAGATAAGAAGCTGCAAGAACAAAAAGATGCGTATTTTGATGAAATCTTTGAGGACTT
TTATGAGAATCTCCCAAGAGATGAGCAGATAATGATCGATTGCTTGCAGGCGATTGACCAGGTGCGGGCAGGCCAAAATT
CATTATATGGTCAAGGTGTGTTGGAGAATAGTTTTGACAGTCTAGTCGACGTAGAACCGTTTCATACTAGTACATTATTG
AAATCAAGACTTTATTTTCTCTGTGCATTAATGGATGGATTGAATTCAGGATTTATAAAAGAAACTACGCAAGAAGAAAT
TGTTCTTCTATTTAAAAAGCTATGTCATCAAATAGAAGAAACTGAATTAGAAGATTTATATTTATTGCGGGATGCTCTGT
TTGCAGCACTGTGCTGTTTGGAGCTTGTTGGAGAGTTCTCCTATTTCAAGATGGCAGTAGATAAGTTAAATTATATTATG
AATAGAACCCGAGATTTCCAAAAGAAACCATTAATTTTAATGGTTGAGTGGAAATATTATATTCAGTGTGATTTTAATGA
GGCAAATCGTAAGTATAAAGAGGCGAAAATGGTTGCTCAAATATTTGGAAATGAGGAATTGATAACGAGTCTTGATGGAG
AATGGAAAGAAGATATAAAAAATATATTCAATAATTTTTGA

Domains

Predicted by InterProScan.

ComR tetratricopeptide (ComR_TPR)

(71-295)

Helix-turn-helix (HTH_3)

(8-59)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comR Streptococcus mutans UA159

37.171

99.346

0.369