Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   H9I45_RS11325 Genome accession   NZ_CP061813
Coordinates   2619259..2620620 (-) Length   453 a.a.
NCBI ID   WP_088352640.1    Uniprot ID   A0A7L8AD54
Organism   Polaribacter haliotis strain KCTC 52418     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2614259..2625620
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H9I45_RS11295 (H9I45_11295) - 2614549..2615019 (-) 471 WP_088352833.1 DUF4296 domain-containing protein -
  H9I45_RS11300 (H9I45_11300) - 2615021..2616361 (-) 1341 WP_088352635.1 dihydroorotase -
  H9I45_RS11305 (H9I45_11305) - 2616370..2616834 (-) 465 WP_088352636.1 GNAT family N-acetyltransferase -
  H9I45_RS11310 (H9I45_11310) - 2616837..2617559 (-) 723 WP_088352637.1 polyprenol monophosphomannose synthase -
  H9I45_RS11315 (H9I45_11315) - 2617718..2618281 (+) 564 WP_254712594.1 DUF4271 domain-containing protein -
  H9I45_RS11320 (H9I45_11320) - 2618298..2619044 (+) 747 WP_088352639.1 uroporphyrinogen-III synthase -
  H9I45_RS11325 (H9I45_11325) radA 2619259..2620620 (-) 1362 WP_088352640.1 DNA repair protein RadA Machinery gene
  H9I45_RS11330 (H9I45_11330) - 2620821..2621765 (-) 945 WP_088352641.1 lysylphosphatidylglycerol synthase transmembrane domain-containing protein -
  H9I45_RS11335 (H9I45_11335) panD 2621768..2622118 (-) 351 WP_088352642.1 aspartate 1-decarboxylase -
  H9I45_RS11340 (H9I45_11340) panC 2622146..2622994 (-) 849 WP_088352643.1 pantoate--beta-alanine ligase -
  H9I45_RS11345 (H9I45_11345) - 2623093..2623902 (+) 810 WP_088352644.1 glycogen/starch synthase -
  H9I45_RS11350 (H9I45_11350) - 2623911..2625521 (+) 1611 WP_088352645.1 DUF4270 family protein -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49552.02 Da        Isoelectric Point: 7.3672

>NTDB_id=484776 H9I45_RS11325 WP_088352640.1 2619259..2620620(-) (radA) [Polaribacter haliotis strain KCTC 52418]
MAKTKTTFFCQNCGTQHAKWVGQCGACKEWNTIVEEIIQKEEKRVWKQSTTAKQTVNKPLKIADIQLNPEERVVTNNNEL
DTVLGGGLVKGSVTLLGGEPGIGKSTLLLQVALNISQKVLYVSGEESQSQIKMRAERLDAKNSNCLILTETNTQQIFKNI
EETEPEVLVIDSIQTLHTNNIEASPGSISQIRETSAELIKFAKETATPVLLIGHINKEGNIAGPKILEHMVDVVLQFEGD
RNHTYRILRSQKNRFGSTSELGIYEMLSTGLREISNPSEILISKKDADLSGTAIASTLEGIRPLMIEIQALVSTAVYGTP
QRSTTGYNLKRLHMILAVLEKRAGFKLGAKDVFLNITGGINVDDPAIDLAVVAAILSSNQDIAINPNVCFAAEVGLAGEI
RPVSKIDQRILEAEKLGYKTFVASKYNKISSKNHGIKLILVGKIEEAFATLFA

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=484776 H9I45_RS11325 WP_088352640.1 2619259..2620620(-) (radA) [Polaribacter haliotis strain KCTC 52418]
ATGGCCAAAACCAAAACAACTTTTTTCTGTCAAAATTGTGGAACGCAACATGCAAAATGGGTTGGACAATGTGGCGCTTG
TAAAGAATGGAATACCATTGTTGAAGAAATTATTCAAAAAGAAGAAAAGCGTGTTTGGAAACAATCTACAACAGCAAAAC
AAACCGTAAATAAACCTTTAAAAATTGCTGATATTCAGCTAAACCCAGAAGAAAGAGTTGTTACCAACAACAACGAATTA
GACACAGTTTTGGGAGGTGGTTTGGTGAAAGGTTCTGTAACACTTTTGGGTGGAGAACCAGGTATTGGAAAATCGACTTT
ATTATTGCAAGTTGCATTAAATATAAGTCAGAAAGTATTGTATGTTTCTGGAGAGGAAAGTCAATCTCAAATAAAAATGA
GAGCCGAAAGATTAGATGCAAAAAATTCTAATTGTTTAATTCTTACAGAAACAAATACACAGCAAATCTTCAAAAATATT
GAGGAAACAGAACCCGAAGTTTTAGTAATCGATTCTATACAAACTTTACACACCAATAATATTGAAGCTTCTCCAGGAAG
TATTTCTCAAATAAGAGAAACTTCTGCAGAGTTGATAAAATTTGCCAAAGAAACTGCAACTCCAGTTTTATTAATTGGTC
ATATAAACAAAGAAGGGAACATTGCTGGACCTAAAATTTTAGAACACATGGTAGATGTTGTTTTACAATTTGAAGGCGAT
AGAAACCATACTTATAGAATTTTAAGAAGTCAAAAAAACAGATTTGGTTCCACATCCGAATTAGGAATTTACGAGATGCT
TTCCACTGGTTTAAGAGAAATATCTAATCCGTCTGAAATTTTAATTTCTAAAAAAGACGCAGATTTAAGTGGAACTGCCA
TTGCAAGTACATTAGAAGGAATTAGACCTTTAATGATTGAGATTCAGGCATTGGTTTCTACTGCTGTTTATGGAACGCCA
CAACGTTCTACAACTGGTTACAATCTAAAACGTTTACATATGATTTTGGCTGTTTTAGAAAAGAGAGCTGGTTTTAAATT
AGGCGCAAAAGATGTATTTTTAAATATTACAGGAGGTATAAATGTAGACGATCCTGCAATTGATTTGGCTGTTGTTGCTG
CAATATTATCATCTAACCAAGATATTGCTATTAACCCAAATGTGTGTTTTGCAGCAGAAGTTGGTTTGGCTGGAGAAATT
AGACCGGTTTCTAAAATAGACCAACGTATTTTAGAAGCAGAGAAATTGGGTTACAAAACCTTTGTTGCATCAAAATACAA
CAAGATATCTTCTAAAAACCATGGAATAAAGCTAATTTTAGTTGGTAAAATTGAGGAAGCTTTTGCGACTCTGTTTGCTT
AA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(73-219)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-35)

Subunit ChlI of Mg-chelatase (ChlI)

(331-427)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7L8AD54

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.339

100

0.494
  radA Streptococcus mitis SK321

48.026

100

0.483
  radA Streptococcus mitis NCTC 12261

48.026

100

0.483
  radA Streptococcus pneumoniae Rx1

48.026

100

0.483
  radA Streptococcus pneumoniae D39

48.026

100

0.483
  radA Streptococcus pneumoniae R6

48.026

100

0.483
  radA Streptococcus pneumoniae TIGR4

48.026

100

0.483