Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   IDM36_RS08090 Genome accession   NZ_CP061801
Coordinates   1720223..1720849 (+) Length   208 a.a.
NCBI ID   WP_182274421.1    Uniprot ID   -
Organism   Enterobacter mori strain HSW1412     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 1720223..1738679 1720223..1720849 within 0


Gene organization within MGE regions


Location: 1720223..1738679
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IDM36_RS08090 (IDM36_08095) sxy/tfoX 1720223..1720849 (+) 627 WP_182274421.1 TfoX/Sxy family DNA transformation protein Regulator
  IDM36_RS08095 (IDM36_08100) yccS 1720806..1722968 (-) 2163 WP_196391110.1 YccS family putative transporter -
  IDM36_RS08100 (IDM36_08105) - 1722988..1723434 (-) 447 WP_182274423.1 YccF domain-containing protein -
  IDM36_RS08105 (IDM36_08110) helD 1723558..1725612 (+) 2055 WP_196391111.1 DNA helicase IV -
  IDM36_RS08110 (IDM36_08115) mgsA 1725672..1726130 (-) 459 WP_182274425.1 methylglyoxal synthase -
  IDM36_RS08115 (IDM36_08120) csgI 1726211..1726873 (-) 663 WP_182274426.1 curli synthesis inhibitor -
  IDM36_RS08120 (IDM36_08125) - 1727047..1727460 (+) 414 WP_182274427.1 CoA-binding protein -
  IDM36_RS08125 (IDM36_08130) hspQ 1727498..1727815 (-) 318 WP_006809336.1 heat shock protein HspQ -
  IDM36_RS08130 (IDM36_08135) rlmI 1727876..1729066 (-) 1191 WP_196391112.1 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI -
  IDM36_RS08135 (IDM36_08140) - 1729241..1729798 (+) 558 WP_196391113.1 kinase inhibitor -
  IDM36_RS08140 (IDM36_08145) - 1729788..1730597 (+) 810 WP_411500186.1 AraC family transcriptional regulator -
  IDM36_RS08145 (IDM36_08150) yccX 1730677..1730967 (+) 291 WP_196391114.1 acylphosphatase -
  IDM36_RS08150 (IDM36_08155) tusE 1730964..1731293 (-) 330 WP_196391362.1 sulfurtransferase TusE -
  IDM36_RS08155 (IDM36_08160) yccA 1731381..1732040 (-) 660 WP_182274440.1 FtsH protease modulator YccA -
  IDM36_RS08160 (IDM36_08165) - 1732309..1733937 (+) 1629 WP_182274441.1 ABC transporter substrate-binding protein -
  IDM36_RS08175 (IDM36_08180) - 1734433..1735398 (-) 966 WP_196391115.1 PDR/VanB family oxidoreductase -
  IDM36_RS08180 (IDM36_08185) hpxD 1735412..1736446 (-) 1035 WP_182274443.1 molybdenum cofactor-independent xanthine hydroxylase subunit HpxD -
  IDM36_RS08185 (IDM36_08190) hpxO 1736464..1737618 (-) 1155 WP_182919737.1 FAD-dependent urate hydroxylase HpxO -
  IDM36_RS08190 (IDM36_08195) uraD 1737859..1738359 (+) 501 WP_182274445.1 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase -
  IDM36_RS08195 (IDM36_08200) uraH 1738356..1738679 (+) 324 WP_182919738.1 hydroxyisourate hydrolase -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 24065.67 Da        Isoelectric Point: 9.5103

>NTDB_id=484752 IDM36_RS08090 WP_182274421.1 1720223..1720849(+) (sxy/tfoX) [Enterobacter mori strain HSW1412]
MKKISYDRIYRSQEYLSPLGEIHHRALFGGYTLAVDDAVFAMVSEGELYLRACEQSAKYCVKHTSSFLTLMKRGRPVLLN
YYRVDDGLWQDRERLLQLSSFALDAARKERSQRHQRHRLKDLPNLTFQLEVLLFEAGITNEETLRALGARASWLKIRMKN
KDLSVKVLFALEGAITGMHEAALPAVIRRELTEWFNALPEPQENHSSR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=484752 IDM36_RS08090 WP_182274421.1 1720223..1720849(+) (sxy/tfoX) [Enterobacter mori strain HSW1412]
ATGAAAAAGATATCTTATGATCGGATTTATAGATCGCAGGAATACCTCTCCCCATTAGGTGAAATTCATCATCGTGCACT
TTTCGGTGGGTATACCCTTGCCGTGGATGATGCCGTCTTCGCGATGGTTTCAGAGGGTGAGCTTTACCTTCGGGCCTGTG
AGCAAAGTGCTAAGTACTGTGTAAAACACACCTCTTCTTTTTTGACGTTAATGAAACGGGGGCGTCCGGTGCTTCTCAAC
TATTATCGTGTCGATGACGGACTCTGGCAGGACAGAGAACGGCTGCTTCAGCTTTCCTCTTTTGCACTCGATGCGGCAAG
AAAAGAGCGCTCCCAGCGTCACCAGCGCCACCGTCTTAAGGATCTGCCAAACCTGACGTTCCAGCTTGAAGTTCTGCTCT
TCGAAGCCGGTATTACAAATGAGGAAACGCTACGAGCGTTGGGAGCCAGAGCCAGCTGGCTGAAGATCCGGATGAAAAAC
AAAGATCTGAGTGTGAAAGTCCTGTTTGCGCTTGAAGGAGCGATCACCGGTATGCATGAGGCGGCGCTCCCGGCGGTCAT
TCGCCGGGAGCTGACGGAGTGGTTTAATGCGTTGCCTGAGCCACAGGAGAATCACTCCTCCAGGTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(117-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

59.113

97.596

0.577