Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   J8N08_RS04945 Genome accession   NZ_CP072745
Coordinates   1012066..1012788 (-) Length   240 a.a.
NCBI ID   WP_003512859.1    Uniprot ID   -
Organism   Agrobacterium tumefaciens strain BIM B-441     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1007066..1017788
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J8N08_RS04935 (J8N08_04915) - 1008491..1010926 (+) 2436 WP_333704194.1 ComEC/Rec2 family competence protein -
  J8N08_RS04940 (J8N08_04920) - 1010943..1011626 (-) 684 WP_003512858.1 glutathione S-transferase family protein -
  J8N08_RS04945 (J8N08_04925) dinR/lexA 1012066..1012788 (-) 723 WP_003512859.1 transcriptional repressor LexA Regulator
  J8N08_RS04950 (J8N08_04930) - 1013000..1013881 (+) 882 WP_003512866.1 VOC family protein -
  J8N08_RS04955 (J8N08_04935) kdsA 1013881..1014726 (+) 846 WP_174068324.1 3-deoxy-8-phosphooctulonate synthase -
  J8N08_RS04960 (J8N08_04940) eno 1014874..1016148 (+) 1275 WP_003512870.1 phosphopyruvate hydratase -
  J8N08_RS04965 (J8N08_04945) - 1016485..1016802 (+) 318 WP_003512872.1 FtsB family cell division protein -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 25998.93 Da        Isoelectric Point: 9.3311

>NTDB_id=484738 J8N08_RS04945 WP_003512859.1 1012066..1012788(-) (dinR/lexA) [Agrobacterium tumefaciens strain BIM B-441]
MLTRKQQELLLFIHERMKESGVPPSFDEMKDALDLASKSGIHRLITALEERGFIRRLPNRARALEVIKLPEAYTPGARPQ
RGFSPSVIEGSLGKPKTPEPAPAPKTPANDLGGAVTVPVMGRIAAGVPISAIQNNTHDVAVPVDMLGTGEHYALEVKGDS
MIEAGIFDGDTVIIRNGNTANPGDIVVALVDDEEATLKRFRRKGASIALEAANPAYETRIFGPDRVKIQGKLVGLIRRYH

Nucleotide


Download         Length: 723 bp        

>NTDB_id=484738 J8N08_RS04945 WP_003512859.1 1012066..1012788(-) (dinR/lexA) [Agrobacterium tumefaciens strain BIM B-441]
ATGCTCACGCGCAAACAGCAGGAATTGCTTCTCTTCATTCATGAACGAATGAAAGAGTCCGGCGTGCCGCCCTCCTTCGA
TGAAATGAAGGACGCACTCGATCTTGCTTCGAAATCCGGCATCCACCGCCTGATAACCGCTCTCGAAGAGCGAGGATTCA
TTCGTCGGCTACCGAATAGAGCTCGGGCGCTGGAAGTCATCAAGCTGCCCGAGGCTTATACGCCGGGTGCAAGGCCGCAG
CGCGGCTTTTCGCCAAGCGTTATCGAAGGCAGCCTTGGCAAGCCCAAAACGCCGGAACCGGCCCCTGCCCCCAAGACGCC
GGCCAATGATCTGGGCGGCGCTGTCACCGTGCCGGTCATGGGCCGCATCGCTGCGGGCGTACCGATTTCCGCCATCCAGA
ACAACACCCATGATGTGGCCGTGCCAGTAGACATGCTTGGCACGGGCGAACATTACGCTCTTGAGGTCAAGGGTGATTCG
ATGATCGAGGCCGGCATTTTCGACGGCGACACAGTCATCATCCGCAACGGCAACACCGCCAATCCCGGGGATATCGTTGT
GGCTCTGGTGGATGACGAGGAAGCCACGCTGAAGCGCTTCCGCCGCAAGGGTGCCTCCATTGCGCTCGAGGCGGCAAACC
CAGCCTATGAGACCCGTATCTTCGGGCCCGACCGGGTTAAAATTCAGGGCAAGCTGGTGGGGCTGATCCGCCGCTACCAT
TGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(118-233)

LexA DNA binding domain (LexA_DNA_bind)

(2-63)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

36.25

100

0.363