Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   dnm_RS05815 Genome accession   NZ_CP061800
Coordinates   1457048..1458418 (+) Length   456 a.a.
NCBI ID   WP_207681754.1    Uniprot ID   A0A975GLR5
Organism   Desulfonema magnum strain 4be13     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1452048..1463418
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  dnm_RS05795 (dnm_018870) - 1453230..1454090 (-) 861 WP_207681751.1 hypothetical protein -
  dnm_RS05800 (dnm_018880) - 1454448..1455689 (-) 1242 WP_246555998.1 ISAzo13 family transposase -
  dnm_RS05805 (dnm_018890) - 1455793..1455999 (-) 207 WP_207681752.1 PLDc N-terminal domain-containing protein -
  dnm_RS05810 (dnm_018900) - 1455996..1456808 (-) 813 WP_246556223.1 lytic murein transglycosylase -
  dnm_RS05815 (dnm_018910) radA 1457048..1458418 (+) 1371 WP_207681754.1 DNA repair protein RadA Machinery gene
  dnm_RS05820 (dnm_018920) - 1458622..1459218 (+) 597 WP_207681755.1 RlmE family RNA methyltransferase -
  dnm_RS05825 (dnm_018930) - 1459335..1460084 (+) 750 WP_207683604.1 YebC/PmpR family DNA-binding transcriptional regulator -
  dnm_RS05830 (dnm_018940) - 1460490..1460705 (-) 216 WP_207681756.1 hypothetical protein -
  dnm_RS05835 (dnm_018950) - 1460826..1461026 (-) 201 WP_207681757.1 hypothetical protein -
  dnm_RS05840 (dnm_018970) - 1461318..1462490 (-) 1173 WP_207681758.1 tetratricopeptide repeat protein -
  dnm_RS05845 (dnm_018980) - 1462503..1463225 (-) 723 WP_207681759.1 energy transducer TonB -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 49486.57 Da        Isoelectric Point: 7.7479

>NTDB_id=484737 dnm_RS05815 WP_207681754.1 1457048..1458418(+) (radA) [Desulfonema magnum strain 4be13]
MKKDLKTIFSCQTCGYQTAKWLGKCPDCGRWDTFVEETRAPKSSKGNMRGASSLRTKPVPIDSIKLDHEERILTGIKEFD
RVLGGGLVSGTLVLIGGDPGIGKSTLMLQALYGLAMGGYKVLYVSGEESIRQIRLRSNRLGTLSPDMLVVSEVDMELILS
MADDVKPDVLVIDSIQTMFNGDLSSAPGSVSQVRESAMRLMLMAKKTNISTFLVGHVTKEGAIAGPRLLEHMVDTVLYFE
GDRSHVFRILRAVKNRFGSTNEIGVFEMKEKGLEEVVNPSAVFLSERPSSAPGSVVTASMEGTRPILVELQALASSTNFG
TPRRTILGLDHNRVALLAAVMEKKLGMHLMGHDIFMNVAGGVKVDEPAVDMGIVSAIASSFLDRPIRDNNVILGEVGLTG
EVRAIAHVETRVAEVKKMGFTKCFIPASNLKRMTGIKDGIEVVGIKTVSEAIEELF

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=484737 dnm_RS05815 WP_207681754.1 1457048..1458418(+) (radA) [Desulfonema magnum strain 4be13]
ATGAAAAAAGATTTAAAAACAATTTTTAGCTGTCAGACATGCGGGTATCAGACCGCCAAATGGCTGGGAAAATGTCCTGA
CTGCGGCAGGTGGGACACTTTTGTGGAAGAGACCCGGGCACCAAAATCGTCTAAAGGAAACATGCGAGGCGCATCTTCCC
TCAGAACAAAACCGGTTCCCATAGATTCCATTAAGCTTGATCATGAAGAACGTATCCTGACCGGTATCAAAGAATTTGAC
CGGGTTCTGGGAGGGGGGCTGGTTTCCGGGACCCTTGTCCTGATCGGGGGAGATCCGGGAATCGGCAAATCCACGCTCAT
GCTTCAGGCGCTTTACGGCCTTGCCATGGGCGGATATAAAGTGCTTTATGTTTCCGGGGAGGAATCCATCCGGCAGATAC
GGCTGAGAAGTAACCGTCTGGGCACGTTGTCCCCGGATATGCTGGTGGTTTCGGAAGTGGATATGGAACTCATCCTGTCC
ATGGCTGACGATGTGAAACCGGATGTTCTGGTCATTGATTCCATCCAGACCATGTTCAACGGTGATCTGTCTTCCGCTCC
CGGCAGCGTGAGCCAGGTTCGGGAATCTGCCATGCGGCTGATGCTCATGGCAAAAAAAACAAATATTTCCACTTTTTTGG
TGGGACATGTTACAAAAGAAGGTGCCATTGCCGGGCCAAGACTTTTGGAGCATATGGTGGATACAGTGCTTTATTTTGAG
GGAGACCGGAGCCATGTGTTCAGAATCCTCAGGGCTGTAAAAAACCGGTTCGGATCAACCAATGAAATCGGGGTGTTTGA
AATGAAGGAAAAAGGGCTGGAAGAGGTGGTGAATCCGTCCGCGGTTTTTCTTTCCGAACGTCCTTCCAGCGCCCCGGGTT
CCGTTGTCACCGCAAGCATGGAAGGAACACGGCCCATTCTGGTTGAACTCCAGGCCCTTGCCAGCAGCACGAATTTCGGG
ACACCTCGCAGAACAATCCTGGGGCTTGATCATAACCGGGTGGCGCTGCTTGCTGCTGTCATGGAAAAAAAATTGGGAAT
GCACCTTATGGGCCATGATATCTTTATGAATGTCGCGGGAGGCGTCAAGGTGGATGAGCCTGCTGTTGACATGGGAATTG
TTTCTGCGATTGCGTCCAGCTTTTTGGACCGGCCAATCCGGGATAACAATGTCATACTGGGTGAAGTCGGTCTGACAGGT
GAAGTCAGAGCCATTGCCCATGTTGAGACCCGGGTGGCTGAAGTGAAAAAAATGGGATTTACAAAATGTTTCATACCGGC
AAGCAACCTGAAGCGTATGACAGGAATAAAAGACGGCATCGAAGTTGTGGGGATTAAAACGGTGTCAGAAGCAATAGAGG
AGTTGTTCTGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(353-454)

AAA domain (AAA_25)

(76-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

57.906

98.465

0.57
  radA Streptococcus mitis NCTC 12261

51.656

99.342

0.513
  radA Streptococcus pneumoniae Rx1

51.656

99.342

0.513
  radA Streptococcus pneumoniae D39

51.656

99.342

0.513
  radA Streptococcus pneumoniae R6

51.656

99.342

0.513
  radA Streptococcus pneumoniae TIGR4

51.656

99.342

0.513
  radA Streptococcus mitis SK321

51.435

99.342

0.511