Detailed information    

insolico Bioinformatically predicted

Overview

Name   hexB   Type   Machinery gene
Locus tag   J8N08_RS01635 Genome accession   NZ_CP072745
Coordinates   346049..347869 (-) Length   606 a.a.
NCBI ID   WP_111803517.1    Uniprot ID   -
Organism   Agrobacterium tumefaciens strain BIM B-441     
Function   DNA mismatch repair (predicted from homology)   
Homologous recombination

Genomic Context

Location: 341049..352869
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J8N08_RS01610 (J8N08_01610) - 341827..342066 (+) 240 WP_019564234.1 DUF4170 domain-containing protein -
  J8N08_RS01615 (J8N08_01615) waaA 342282..343604 (+) 1323 WP_019564233.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  J8N08_RS01620 (J8N08_01620) - 343598..344335 (+) 738 WP_333704065.1 HAD family hydrolase -
  J8N08_RS01625 (J8N08_01625) lpxK 344500..345546 (+) 1047 WP_019564231.1 tetraacyldisaccharide 4'-kinase -
  J8N08_RS01630 (J8N08_01630) - 345678..345899 (-) 222 WP_003519053.1 DUF2093 domain-containing protein -
  J8N08_RS01635 (J8N08_01635) hexB 346049..347869 (-) 1821 WP_111803517.1 DNA mismatch repair endonuclease MutL Machinery gene
  J8N08_RS01640 (J8N08_01640) - 348277..349896 (+) 1620 WP_162686650.1 response regulator -
  J8N08_RS01645 (J8N08_01645) - 350039..351391 (+) 1353 WP_003519050.1 putative bifunctional diguanylate cyclase/phosphodiesterase -
  J8N08_RS01650 (J8N08_01650) - 351486..352373 (-) 888 WP_333704066.1 SMP-30/gluconolactonase/LRE family protein -

Sequence

Protein


Download         Length: 606 a.a.        Molecular weight: 65119.82 Da        Isoelectric Point: 6.4000

>NTDB_id=484729 J8N08_RS01635 WP_111803517.1 346049..347869(-) (hexB) [Agrobacterium tumefaciens strain BIM B-441]
MAIKQLSETLINQIAAGEVIERPSSATKELVENAIDAGATRIEIATAGGGKGLVRITDNGSGMSPADLELAVRRHCTSKI
STTLDDIRTLGFRGEALPSIGSVAKLSITSRQHGAEQGSVISVTGGKVSEVRPAAANAGTIVEVRDLFFATPARLKFLKT
ERAEAAAITEVVKRMAIAFPHIRFVLSGTDRSTLEIPSTGDDHLARMAQILGAEFKDNAIEIDAGREDVTLSGFAGVPTF
NRGNSAHQYVFVNGRPVQDKLLLSAIRGAYAETVPHGRYPVAVLSLTLDPAFVDVNVHPAKSDVRFRDPGLVRGLIVGAI
RQALTRDGDRAATTGASQMMNAFRPGYSPSNLRPSAAATWSAAASPSRPLAISGNMQFAEAVQSRFSDITMPTARAEPRE
VYEASASSSLEPSQYPLGAARAQLHQNYIVAQTEDGLVIVDQHAAHERLVFEEMRNALHSRRPPSQVLLIPEIIDLPEED
CDRLMDHAAGFDALGLVIERFGPGAVAVRETPAMLGEVNVQGLVRQLADEIAEWDAASTLANKLEYVAATMACHGSVRSG
RRMRPEEMNALLRQMENTPGSGQCNHGRPTYIELKLSDIERLFGRS

Nucleotide


Download         Length: 1821 bp        

>NTDB_id=484729 J8N08_RS01635 WP_111803517.1 346049..347869(-) (hexB) [Agrobacterium tumefaciens strain BIM B-441]
ATGGCCATCAAGCAGCTTTCAGAAACCCTCATCAACCAGATCGCCGCCGGCGAGGTCATCGAAAGACCCTCCAGCGCCAC
GAAGGAGCTGGTGGAAAACGCCATCGACGCGGGCGCAACGCGCATCGAAATCGCCACGGCAGGCGGCGGCAAGGGACTGG
TGCGCATCACCGATAACGGCTCCGGCATGTCGCCTGCCGATCTGGAGCTTGCGGTCCGGCGCCATTGCACCTCGAAAATA
TCCACCACGCTTGACGATATCCGCACGCTTGGCTTTCGCGGCGAGGCCCTGCCCTCCATCGGCTCGGTTGCCAAGCTTTC
CATCACCAGCCGGCAACACGGCGCAGAACAGGGTTCGGTGATCTCCGTCACCGGCGGCAAAGTCTCCGAGGTCCGGCCCG
CCGCTGCCAATGCCGGCACCATCGTCGAGGTGCGCGACCTGTTTTTCGCGACGCCCGCACGGCTGAAATTCCTGAAGACG
GAGCGAGCGGAGGCAGCCGCCATTACCGAAGTCGTCAAGCGGATGGCAATTGCCTTTCCGCATATCCGCTTCGTGCTGTC
AGGCACCGACCGCTCCACGCTTGAAATCCCCTCCACCGGCGACGATCACCTTGCCCGCATGGCGCAGATTCTCGGTGCCG
AGTTCAAGGACAACGCCATCGAAATCGATGCCGGGCGCGAGGATGTAACGCTCTCCGGTTTTGCCGGCGTGCCGACCTTC
AACCGCGGCAACTCGGCGCATCAATATGTCTTCGTCAACGGTCGCCCGGTGCAGGACAAATTGCTGTTGTCCGCCATTCG
CGGTGCCTATGCGGAAACCGTGCCGCACGGGCGATATCCAGTCGCGGTGCTGTCCCTGACGCTCGATCCCGCCTTTGTCG
ACGTGAACGTGCATCCGGCGAAATCAGATGTGCGCTTCCGCGATCCCGGCCTGGTTCGCGGGCTGATCGTCGGTGCGATC
CGCCAGGCGTTGACCCGCGACGGTGACAGGGCGGCGACGACTGGTGCCAGCCAGATGATGAACGCCTTTCGCCCCGGCTA
CAGCCCGTCCAATCTCCGACCGTCTGCCGCTGCGACATGGTCCGCCGCGGCCTCGCCTTCCCGACCGCTTGCCATTTCCG
GGAACATGCAATTTGCCGAGGCCGTGCAATCGCGCTTTTCCGACATCACCATGCCGACCGCGCGGGCAGAACCTCGCGAG
GTTTACGAGGCCTCTGCAAGCTCGTCGCTCGAACCGTCACAATATCCGCTCGGCGCCGCGCGGGCGCAGTTGCACCAGAA
TTACATCGTCGCGCAGACGGAAGACGGCCTCGTCATCGTCGACCAGCATGCGGCGCATGAGCGGCTGGTGTTTGAGGAAA
TGCGCAATGCGCTGCATTCCAGACGCCCGCCTTCACAGGTGCTGCTCATTCCTGAGATCATCGACCTTCCCGAAGAGGAT
TGCGACAGGCTGATGGACCATGCGGCTGGTTTCGATGCGCTGGGACTGGTCATCGAGCGTTTCGGGCCGGGGGCGGTCGC
GGTTCGCGAAACGCCAGCGATGCTTGGTGAGGTCAACGTGCAGGGGCTGGTGCGGCAGCTTGCCGACGAGATCGCTGAAT
GGGACGCTGCCTCCACGCTTGCCAACAAGCTGGAATATGTCGCCGCCACCATGGCTTGCCACGGCTCGGTGCGTTCAGGG
CGGCGCATGCGGCCGGAGGAGATGAACGCGCTTTTACGGCAGATGGAAAACACGCCGGGTTCAGGACAGTGCAATCACGG
TCGTCCGACCTATATTGAGCTAAAACTTTCCGATATAGAACGTCTCTTCGGCCGAAGCTGA

Domains

Predicted by InterProScan.

MutL C terminal dimerisation domain (MutL_C)

(416-562)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c_3)

(24-122)

DNA mismatch repair protein, C-terminal domain (DNA_mis_repair)

(208-324)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hexB Streptococcus pneumoniae R6

34.326

100

0.361