Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   J8N08_RS00740 Genome accession   NZ_CP072745
Coordinates   155839..156204 (+) Length   121 a.a.
NCBI ID   WP_003493773.1    Uniprot ID   A0A1S9E560
Organism   Agrobacterium tumefaciens strain BIM B-441     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 150839..161204
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J8N08_RS00725 (J8N08_00725) - 153054..153431 (-) 378 WP_112682624.1 hypothetical protein -
  J8N08_RS00730 (J8N08_00730) - 153948..155543 (+) 1596 WP_244420493.1 methyl-accepting chemotaxis protein -
  J8N08_RS00735 (J8N08_00735) - 155543..155842 (+) 300 WP_003514997.1 STAS domain-containing protein -
  J8N08_RS00740 (J8N08_00740) scnR 155839..156204 (+) 366 WP_003493773.1 chemotaxis response regulator CheY1 Regulator
  J8N08_RS00745 (J8N08_00745) - 156221..158488 (+) 2268 WP_003514998.1 chemotaxis protein CheA -
  J8N08_RS00750 (J8N08_00750) cheR 158502..159410 (+) 909 WP_003515000.1 protein-glutamate O-methyltransferase CheR -
  J8N08_RS00755 (J8N08_00755) cheB 159407..160462 (+) 1056 WP_013635453.1 protein-glutamate O-methylesterase CheB -
  J8N08_RS00760 (J8N08_00760) cheY2 160462..160851 (+) 390 WP_003515008.1 chemotaxis response regulator CheY2 -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13482.48 Da        Isoelectric Point: 4.9534

>NTDB_id=484728 J8N08_RS00740 WP_003493773.1 155839..156204(+) (scnR) [Agrobacterium tumefaciens strain BIM B-441]
MKKKVLTVDDSRTIRNMLLVTLNNAGFETIQAEDGIEGLEVLEQSNPDVIVTDINMPRLDGFGFIEGVRRNEKYRAIPIL
VLTTESDAEKKNRARQAGATGWIVKPFDPAKLIDAIERVTA

Nucleotide


Download         Length: 366 bp        

>NTDB_id=484728 J8N08_RS00740 WP_003493773.1 155839..156204(+) (scnR) [Agrobacterium tumefaciens strain BIM B-441]
GTGAAGAAAAAAGTTCTTACTGTGGATGATTCCAGAACGATCAGGAACATGCTCCTGGTCACGCTCAACAATGCCGGTTT
CGAGACAATTCAGGCCGAAGACGGCATTGAGGGTCTCGAAGTGCTGGAGCAGAGCAACCCCGACGTCATCGTGACCGATA
TCAACATGCCCCGTCTTGACGGTTTCGGCTTCATCGAGGGTGTGCGTCGCAACGAGAAGTACCGGGCCATACCGATCCTC
GTTCTGACGACCGAAAGCGACGCAGAGAAGAAGAACCGCGCCCGTCAGGCCGGTGCGACCGGCTGGATCGTCAAGCCGTT
CGATCCTGCGAAGCTCATCGATGCCATTGAACGCGTAACTGCCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1S9E560

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

39.286

92.562

0.364