Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   IFJ77_RS22425 Genome accession   NZ_CP061780
Coordinates   4809688..4810323 (+) Length   211 a.a.
NCBI ID   WP_003091163.1    Uniprot ID   A0A0H2ZBU7
Organism   Pseudomonas aeruginosa strain ZBX-P11     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4804688..4815323
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IFJ77_RS22410 (IFJ77_22410) - 4805406..4806650 (+) 1245 WP_003105198.1 lipoprotein-releasing ABC transporter permease subunit -
  IFJ77_RS22415 (IFJ77_22415) - 4806726..4807259 (-) 534 WP_003091165.1 DUF2062 domain-containing protein -
  IFJ77_RS22420 (IFJ77_22420) comA 4807390..4809615 (+) 2226 WP_023100928.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  IFJ77_RS22425 (IFJ77_22425) exbB 4809688..4810323 (+) 636 WP_003091163.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  IFJ77_RS22430 (IFJ77_22430) - 4810320..4810760 (+) 441 WP_003091161.1 biopolymer transporter ExbD -
  IFJ77_RS22435 (IFJ77_22435) lpxK 4810760..4811758 (+) 999 WP_003130692.1 tetraacyldisaccharide 4'-kinase -
  IFJ77_RS22440 (IFJ77_22440) - 4811796..4811981 (+) 186 WP_003091157.1 Trm112 family protein -
  IFJ77_RS22445 (IFJ77_22445) kdsB 4811981..4812745 (+) 765 WP_003091155.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  IFJ77_RS22450 (IFJ77_22450) - 4812745..4813209 (+) 465 WP_003106924.1 low molecular weight protein-tyrosine-phosphatase -
  IFJ77_RS22455 (IFJ77_22455) murB 4813206..4814225 (+) 1020 WP_021265002.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22890.06 Da        Isoelectric Point: 6.7278

>NTDB_id=484721 IFJ77_RS22425 WP_003091163.1 4809688..4810323(+) (exbB) [Pseudomonas aeruginosa strain ZBX-P11]
MWELVQAGGWMMLPIILSSIAATAIVAERLWTLRKSRVAPPELLGQVWKQIKGKQLSAQKLKDLRANSPLGEILAAGLAN
SKHGREIMKECIEEAASGVIHELERYLNALGTIAAMAPLLGLLGTVFGMIQIFGAFMDNGMANSPMLAAGISKALITTAA
GLLVAIPAVFFHRYLLRRVDELVIAMEQEAIKLVEVVQGDREVDYVEEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=484721 IFJ77_RS22425 WP_003091163.1 4809688..4810323(+) (exbB) [Pseudomonas aeruginosa strain ZBX-P11]
GTGTGGGAACTGGTTCAAGCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCGATCGCCGCCACCGCCATCGTCGC
GGAGCGCCTGTGGACGCTGCGCAAGAGCCGCGTCGCGCCGCCCGAGCTGCTCGGCCAGGTGTGGAAGCAGATCAAGGGCA
AGCAACTGAGCGCCCAGAAGCTCAAGGACCTGCGCGCCAACTCGCCGCTGGGAGAGATCCTCGCCGCCGGCCTGGCCAAC
TCCAAGCACGGCCGCGAGATCATGAAGGAGTGCATCGAGGAGGCTGCTTCCGGTGTCATCCACGAGCTGGAGCGCTACCT
CAACGCCCTCGGCACCATCGCCGCGATGGCGCCGCTGCTGGGCCTGCTGGGCACGGTGTTCGGCATGATCCAGATCTTCG
GCGCCTTCATGGACAACGGCATGGCCAACTCGCCGATGCTCGCCGCGGGCATCTCCAAGGCATTGATCACCACCGCCGCC
GGCCTGCTGGTGGCGATTCCGGCGGTGTTCTTCCATCGCTACCTGCTGCGGCGGGTCGACGAACTGGTGATCGCCATGGA
GCAGGAGGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGATCGTGAAGTCGACTACGTCGAGGAAGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZBU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.043

100

0.81