Detailed information NTG0484660

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: J8I92_RS05580
• Genome accession: NZ_CP072688
• Coordinates: 1154383..1155375 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain P4
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1149383..1160375

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J8I92_RS05550 (J8I92_05475)	ispD	1149444..1150154 (+)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
J8I92_RS05555 (J8I92_05480)	ispF	1150154..1150633 (+)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
J8I92_RS05560 (J8I92_05485)	truD	1150630..1151679 (+)	1050	WP_000568959.1	tRNA pseudouridine(13) synthase TruD	-
J8I92_RS05565 (J8I92_05490)	surE	1151660..1152421 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
J8I92_RS05570 (J8I92_05495)	pcm	1152415..1153041 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
J8I92_RS05575 (J8I92_05500)	nlpD	1153226..1154320 (+)	1095	WP_306217602.1	murein hydrolase activator NlpD	-
J8I92_RS05580 (J8I92_05505)	rpoS	1154383..1155375 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
J8I92_RS05585 (J8I92_05510)	-	1155553..1156104 (-)	552	WP_001179442.1	flavodoxin family protein	-
J8I92_RS05590 (J8I92_05515)	-	1156329..1157372 (+)	1044	WP_001161573.1	MBL fold metallo-hydrolase	-
J8I92_RS05595 (J8I92_05520)	ygbN	1157515..1158879 (-)	1365	WP_000104433.1	GntP family transporter	-
J8I92_RS05600 (J8I92_05525)	ygbM	1158968..1159744 (-)	777	WP_001136928.1	HPr family phosphocarrier protein	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=484660 J8I92_RS05580 WP_000081550.1 1154383..1155375(+) (rpoS) [Escherichia coli strain P4]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=484660 J8I92_RS05580 WP_000081550.1 1154383..1155375(+) (rpoS) [Escherichia coli strain P4]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGCCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGATCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715