Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   J8I95_RS09145 Genome accession   NZ_CP072687
Coordinates   1925980..1927404 (-) Length   474 a.a.
NCBI ID   WP_000132557.1    Uniprot ID   -
Organism   Escherichia coli strain YP3     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1920980..1932404
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J8I95_RS09115 (J8I95_09025) yeeZ 1921035..1921859 (+) 825 WP_000754734.1 SDR family oxidoreductase -
  J8I95_RS09120 (J8I95_09030) yeeY 1921905..1922834 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  J8I95_RS09125 (J8I95_09035) yoeI 1923049..1923111 (+) 63 WP_010723108.1 membrane protein YoeI -
  J8I95_RS09130 (J8I95_09040) plaP 1923101..1924459 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  J8I95_RS09135 (J8I95_09045) tsuA 1924638..1925696 (+) 1059 WP_265750541.1 thiosulfate utilization transporter TsuA/YeeE -
  J8I95_RS09140 (J8I95_09050) tsuB 1925710..1925937 (+) 228 WP_000985267.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  J8I95_RS09145 (J8I95_09055) sbcB 1925980..1927404 (-) 1425 WP_000132557.1 exodeoxyribonuclease I Machinery gene
  J8I95_RS09150 (J8I95_09060) - 1927586..1928641 (+) 1056 Protein_1792 integrase family protein -
  J8I95_RS09155 (J8I95_09065) - 1928714..1929834 (+) 1121 WP_085962473.1 IS3-like element ISSen4 family transposase -
  J8I95_RS09160 (J8I95_09070) - 1930118..1931323 (+) 1206 WP_001535426.1 hypothetical protein -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 54353.62 Da        Isoelectric Point: 5.3498

>NTDB_id=484584 J8I95_RS09145 WP_000132557.1 1925980..1927404(-) (sbcB) [Escherichia coli strain YP3]
MTDTDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGENE
AAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGL
PSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRG
NTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDAD
RLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDK
RIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQIFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=484584 J8I95_RS09145 WP_000132557.1 1925980..1927404(-) (sbcB) [Escherichia coli strain YP3]
ATGACAGACACAGATAAACAACCTACCTTCCTCTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCGCCC
TGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCGCGG
ATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAACGAA
GCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTTCGA
CGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGCGCT
GGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGTCTA
CCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGTGTA
CGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGCAATAAAC
ACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGTGGC
AATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGACAT
TTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACGCCG
CCGTTCCGGTTAAACTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCCGAC
CGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGTGGT
AGCGATATTCGCGGAAGCCGAACCGTTTACACCTTCAGATAATGTGGATGCACAGCTTTATAATGGCTTTTTCAGTGACG
CCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGATAAA
CGAATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTGGCT
GGAGCACCGCCGCCAGATCTTCACGCCAGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGTATG
CCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(211-471)

Exonuclease (RNase_T)

(12-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

99.156

0.584