Detailed information NTG0484571

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: J8I95_RS05765
• Genome accession: NZ_CP072687
• Coordinates: 1188640..1189632 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain YP3
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1183640..1194632

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J8I95_RS05735 (J8I95_05660)	ispD	1183701..1184411 (+)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
J8I95_RS05740 (J8I95_05665)	ispF	1184411..1184890 (+)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
J8I95_RS05745 (J8I95_05670)	truD	1184887..1185936 (+)	1050	WP_000568959.1	tRNA pseudouridine(13) synthase TruD	-
J8I95_RS05750 (J8I95_05675)	surE	1185917..1186678 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
J8I95_RS05755 (J8I95_05680)	pcm	1186672..1187298 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
J8I95_RS05760 (J8I95_05685)	nlpD	1187483..1188577 (+)	1095	WP_306217602.1	murein hydrolase activator NlpD	-
J8I95_RS05765 (J8I95_05690)	rpoS	1188640..1189632 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
J8I95_RS05770 (J8I95_05695)	-	1189810..1190361 (-)	552	WP_001179442.1	flavodoxin family protein	-
J8I95_RS05775 (J8I95_05700)	-	1190586..1191629 (+)	1044	WP_001161573.1	MBL fold metallo-hydrolase	-
J8I95_RS05780 (J8I95_05705)	ygbN	1191772..1193136 (-)	1365	WP_000104433.1	GntP family transporter	-
J8I95_RS05785 (J8I95_05710)	ygbM	1193225..1194001 (-)	777	WP_001136928.1	HPr family phosphocarrier protein	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=484571 J8I95_RS05765 WP_000081550.1 1188640..1189632(+) (rpoS) [Escherichia coli strain YP3]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=484571 J8I95_RS05765 WP_000081550.1 1188640..1189632(+) (rpoS) [Escherichia coli strain YP3]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGCCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGATCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715