Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrB   Type   Machinery gene
Locus tag   LMRG_RS15050 Genome accession   NC_017544
Coordinates   316968..317177 (+) Length   69 a.a.
NCBI ID   WP_014930816.1    Uniprot ID   -
Organism   Listeria monocytogenes 10403S     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Genomic Context

Location: 311968..322177
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LMRG_RS01510 (LMRG_02580) - 312499..313329 (+) 831 WP_003722911.1 MBL fold metallo-hydrolase -
  LMRG_RS01515 (LMRG_02579) htrA 313427..314932 (+) 1506 WP_014930814.1 serine protease HtrA -
  LMRG_RS01520 (LMRG_02578) rlmH 315619..316098 (+) 480 WP_008946708.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  LMRG_RS14955 - 316537..316986 (+) 450 WP_223168478.1 recombinase family protein -
  LMRG_RS15050 ccrB 316968..317177 (+) 210 WP_014930816.1 recombinase zinc beta ribbon domain-containing protein Machinery gene
  LMRG_RS14960 (LMRG_02934) - 317206..317739 (+) 534 WP_014930817.1 hypothetical protein -
  LMRG_RS01540 (LMRG_02577) - 317879..318991 (-) 1113 WP_014600446.1 restriction endonuclease subunit S -
  LMRG_RS01545 (LMRG_02576) - 318984..320603 (-) 1620 WP_014600447.1 class I SAM-dependent DNA methyltransferase -

Sequence

Protein


Download         Length: 69 a.a.        Molecular weight: 7910.99 Da        Isoelectric Point: 10.3845

>NTDB_id=48455 LMRG_RS15050 WP_014930816.1 316968..317177(+) (ccrB) [Listeria monocytogenes 10403S]
MAANNVINRLKDGTKKRIRYYSCFQFRNKGASVCHANSIRADQAEQFVAERLKETVQHPQIIKEVNSST

Nucleotide


Download         Length: 210 bp        

>NTDB_id=48455 LMRG_RS15050 WP_014930816.1 316968..317177(+) (ccrB) [Listeria monocytogenes 10403S]
ATGGCAGCAAATAATGTGATCAATCGACTAAAGGATGGAACCAAAAAACGTATTCGGTATTATTCCTGTTTTCAATTTCG
AAATAAAGGAGCGAGTGTTTGCCATGCGAATTCAATCCGAGCAGATCAAGCAGAACAGTTTGTGGCTGAAAGGTTGAAGG
AAACCGTTCAACACCCACAAATTATAAAAGAAGTTAATTCAAGCACTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrB Staphylococcus aureus N315

58.462

94.203

0.551

Multiple sequence alignment