Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   J8I94_RS09445 Genome accession   NZ_CP072686
Coordinates   1961538..1962965 (-) Length   475 a.a.
NCBI ID   WP_282478838.1    Uniprot ID   -
Organism   Escherichia coli strain FP4     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1956538..1967965
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J8I94_RS09415 (J8I94_09325) yeeZ 1956593..1957417 (+) 825 WP_282478837.1 SDR family oxidoreductase -
  J8I94_RS09420 (J8I94_09330) yeeY 1957463..1958392 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  J8I94_RS09425 (J8I94_09335) yoeI 1958607..1958669 (+) 63 WP_010723108.1 membrane protein YoeI -
  J8I94_RS09430 (J8I94_09340) plaP 1958659..1960017 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  J8I94_RS09435 (J8I94_09345) tsuA 1960196..1961254 (+) 1059 WP_000492324.1 thiosulfate utilization transporter TsuA/YeeE -
  J8I94_RS09440 (J8I94_09350) tsuB 1961268..1961495 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  J8I94_RS09445 (J8I94_09355) sbcB 1961538..1962965 (-) 1428 WP_282478838.1 exodeoxyribonuclease I Machinery gene
  J8I94_RS09450 (J8I94_09360) dacD 1963174..1964340 (+) 1167 WP_001297905.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  J8I94_RS09455 (J8I94_09365) sbmC 1964459..1964932 (+) 474 WP_001105376.1 DNA gyrase inhibitor SbmC -
  J8I94_RS09460 (J8I94_09370) yeeA 1965130..1966188 (+) 1059 WP_001200894.1 FUSC family protein -
  J8I94_RS09465 (J8I94_09375) tmaR 1966360..1966689 (+) 330 WP_000450409.1 DUF496 family protein -
  J8I94_RS24720 (J8I94_09380) - 1966790..1966972 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  J8I94_RS09475 - 1967092..1967172 (+) 81 WP_023441679.1 hypothetical protein -
  J8I94_RS09480 (J8I94_09390) - 1967461..1967541 (-) 81 Protein_1861 hypothetical protein -
  J8I94_RS09485 (J8I94_09395) yeeW 1967587..1967781 (-) 195 WP_000988601.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54469.76 Da        Isoelectric Point: 5.6070

>NTDB_id=484495 J8I94_RS09445 WP_282478838.1 1961538..1962965(-) (sbcB) [Escherichia coli strain FP4]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTARADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLENLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAQEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=484495 J8I94_RS09445 WP_282478838.1 1961538..1962965(-) (sbcB) [Escherichia coli strain FP4]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCTCGGGCGAAAGGAGAAAAC
GAAGCCGCATTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTACGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAGAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGAAAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGAGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTTGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGCTACGCTGATGAATTGCAGATGCTGGCACAACAGT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGCAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581