Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   IEE84_RS07390 Genome accession   NZ_CP061739
Coordinates   1770536..1771447 (-) Length   303 a.a.
NCBI ID   WP_227526712.1    Uniprot ID   -
Organism   Psychrobacter sp. 28M-43     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1765536..1776447
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IEE84_RS07365 (IEE84_07365) aroQ 1765948..1766484 (+) 537 WP_191113685.1 type II 3-dehydroquinate dehydratase -
  IEE84_RS07370 (IEE84_07370) - 1766608..1767909 (+) 1302 WP_191113686.1 ABC1 kinase family protein -
  IEE84_RS07375 (IEE84_07375) - 1767943..1768773 (-) 831 WP_057760421.1 ion transporter -
  IEE84_RS07380 (IEE84_07380) - 1769091..1769840 (+) 750 WP_191113687.1 YebC/PmpR family DNA-binding transcriptional regulator -
  IEE84_RS07385 (IEE84_07385) - 1769915..1770481 (-) 567 WP_191113688.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  IEE84_RS07390 (IEE84_07390) pilA 1770536..1771447 (-) 912 WP_227526712.1 signal recognition particle-docking protein FtsY Machinery gene
  IEE84_RS07395 (IEE84_07395) - 1772210..1772356 (+) 147 WP_191113690.1 hypothetical protein -
  IEE84_RS07400 (IEE84_07400) - 1772422..1773918 (+) 1497 WP_191113691.1 M16 family metallopeptidase -
  IEE84_RS07405 (IEE84_07405) - 1773986..1775563 (+) 1578 WP_191113692.1 M16 family metallopeptidase -
  IEE84_RS07410 (IEE84_07410) - 1775714..1776289 (-) 576 WP_191113693.1 hypothetical protein -

Sequence

Protein


Download         Length: 303 a.a.        Molecular weight: 32598.45 Da        Isoelectric Point: 5.2445

>NTDB_id=484427 IEE84_RS07390 WP_227526712.1 1770536..1771447(-) (pilA) [Psychrobacter sp. 28M-43]
MKTGLSKSRKNLAEGMVSILIGGKEIDDELLEEVEDQLLVADIGVNATNRIIKSLTEQTDRGDLIYAHSLYKALQSELVD
ILTPKVEPLVIDTSKKPFVILVVGVNGVGKTTTIGKLAKRLQGEGKSVMLAAGDTFRAAATEQLQIWGERNHIPVVAQGH
GSDSASVIFDAMQSAKAKNIDVLIADTAGRLQNKTHLMAELEKVVRVMRKADPSAPHEGMIVLDAGTGQNAINQVELFNK
VVPLTGITITKLDGTAKGGVVFNIAETTDVPIRYIGVGESIDDLRSFSPKQFVAALFETDDKE

Nucleotide


Download         Length: 912 bp        

>NTDB_id=484427 IEE84_RS07390 WP_227526712.1 1770536..1771447(-) (pilA) [Psychrobacter sp. 28M-43]
ATGAAAACGGGCCTCAGTAAGTCACGCAAAAACTTAGCTGAAGGCATGGTCAGTATCTTAATCGGTGGTAAAGAGATTGA
TGACGAGCTATTAGAAGAAGTCGAAGATCAGCTATTGGTAGCCGATATTGGCGTCAACGCGACGAACCGTATCATCAAGA
GCCTCACCGAGCAGACAGATCGTGGTGACTTGATCTATGCTCATTCTTTATATAAAGCATTGCAAAGTGAACTGGTTGAT
ATCCTAACGCCAAAAGTTGAGCCATTGGTGATTGATACTAGCAAAAAGCCGTTTGTTATATTGGTAGTAGGTGTCAATGG
CGTAGGGAAAACCACAACGATTGGTAAGCTTGCCAAGCGTCTACAAGGTGAGGGTAAGTCAGTCATGCTGGCAGCGGGTG
ATACATTCCGTGCGGCAGCTACTGAGCAGCTACAGATTTGGGGTGAGCGCAATCATATTCCAGTAGTGGCGCAAGGTCAT
GGTTCTGACAGCGCTTCTGTCATTTTTGATGCGATGCAATCAGCCAAAGCAAAAAATATCGATGTGCTCATCGCTGATAC
TGCGGGACGTCTGCAAAACAAGACACATTTGATGGCAGAGTTAGAGAAGGTCGTACGTGTCATGCGTAAAGCGGATCCAA
GTGCCCCGCATGAAGGTATGATTGTACTGGATGCTGGCACGGGTCAAAATGCTATCAACCAAGTTGAACTGTTTAATAAA
GTTGTGCCGCTGACAGGCATCACCATTACTAAGTTAGATGGTACTGCTAAAGGTGGCGTGGTATTTAATATTGCCGAAAC
GACAGATGTGCCTATCCGCTATATCGGTGTGGGTGAGTCGATTGACGACTTGCGTTCTTTTAGTCCGAAGCAATTTGTCG
CCGCTTTGTTCGAGACCGACGATAAAGAATAA

Domains

Predicted by InterproScan.

SRP54-type protein, GTPase domain (SRP54)

(97-297)

SRP54-type protein, helical bundle domain (SRP54_N)

(18-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

52.013

98.35

0.512