Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   ID616_RS27570 Genome accession   NZ_CP061723
Coordinates   6052225..6052626 (-) Length   133 a.a.
NCBI ID   WP_016501972.1    Uniprot ID   A0AAU8S4N7
Organism   Pseudomonas putida strain ZXPA-20     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 6047225..6057626
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ID616_RS27555 (ID616_27555) - 6049189..6051213 (-) 2025 WP_224372594.1 methyl-accepting chemotaxis protein -
  ID616_RS27560 (ID616_27560) - 6051261..6051815 (-) 555 WP_016489540.1 chemotaxis protein CheW -
  ID616_RS27565 (ID616_27565) pilH 6051812..6052177 (-) 366 WP_016489541.1 twitching motility response regulator PilH -
  ID616_RS27570 (ID616_27570) pilG 6052225..6052626 (-) 402 WP_016501972.1 PleD family two-component system response regulator Regulator
  ID616_RS27575 (ID616_27575) gshB 6052779..6053732 (+) 954 WP_060516883.1 glutathione synthase -
  ID616_RS27580 (ID616_27580) - 6053824..6054729 (+) 906 WP_191087054.1 energy transducer TonB -
  ID616_RS27585 (ID616_27585) - 6055087..6055656 (+) 570 WP_016489545.1 YqgE/AlgH family protein -
  ID616_RS27590 (ID616_27590) ruvX 6055656..6056081 (+) 426 WP_016489546.1 Holliday junction resolvase RuvX -
  ID616_RS27595 (ID616_27595) pyrR 6056131..6056649 (+) 519 WP_016489547.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -

Sequence

Protein


Download         Length: 133 a.a.        Molecular weight: 14601.87 Da        Isoelectric Point: 6.4772

>NTDB_id=484405 ID616_RS27570 WP_016501972.1 6052225..6052626(-) (pilG) [Pseudomonas putida strain ZXPA-20]
MEQPLKVMVIDDSRTIRRTAQMLLGEAGCEVITASDGFDALAKIVDHQPSIIFVDVLMPRLDGYQTCAVIKHNSAFKDTP
VILLSSRDGLFDKARGRVVGSDQFLTKPFSKEELLDAIRAHVPGFTAPPQHAP

Nucleotide


Download         Length: 402 bp        

>NTDB_id=484405 ID616_RS27570 WP_016501972.1 6052225..6052626(-) (pilG) [Pseudomonas putida strain ZXPA-20]
ATGGAACAACCCCTGAAGGTGATGGTGATCGACGATTCGCGCACGATCCGCCGCACCGCCCAGATGTTGCTCGGTGAAGC
GGGCTGCGAGGTGATCACCGCCAGCGATGGCTTCGATGCCCTGGCCAAGATCGTCGACCACCAGCCCAGCATCATCTTCG
TTGATGTGCTGATGCCGCGCCTGGACGGCTACCAGACCTGCGCCGTGATCAAGCACAACAGTGCTTTCAAGGACACCCCG
GTGATCCTGCTGTCGTCGCGCGATGGCCTGTTCGACAAGGCCCGCGGCCGGGTGGTCGGCTCTGATCAGTTCCTGACCAA
ACCGTTCAGCAAGGAAGAGCTGCTCGACGCGATCCGCGCCCACGTGCCCGGGTTTACCGCGCCTCCACAACACGCACCCT
GA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(7-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

70

90.226

0.632