Detailed information NTG0484402

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: J8G07_RS13210
• Genome accession: NZ_CP072612
• Coordinates: 2577178..2578314 (-)
• Length: 378 a.a.
• NCBI ID: WP_032873352.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain G10
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 2572178..2583314

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J8G07_RS13180	-	2572232..2574034 (+)	1803	WP_032873344.1	T7SS effector LXG polymorphic toxin	-
J8G07_RS13185	-	2574050..2574508 (+)	459	WP_032873346.1	SMI1/KNR4 family protein	-
J8G07_RS13190	-	2574763..2574846 (-)	84	WP_119834764.1	putative holin-like toxin	-
J8G07_RS13195	-	2575258..2575617 (+)	360	WP_032873347.1	hypothetical protein	-
J8G07_RS13200	-	2575678..2576697 (-)	1020	WP_032873350.1	hypothetical protein	-
J8G07_RS13205	-	2577006..2577188 (-)	183	WP_003153655.1	hypothetical protein	-
J8G07_RS13210	rapF	2577178..2578314 (-)	1137	WP_032873352.1	Rap family tetratricopeptide repeat protein	Regulator
J8G07_RS13215	-	2578683..2579134 (+)	452	Protein_2569	hypothetical protein	-
J8G07_RS13220	-	2579366..2579740 (-)	375	WP_007407921.1	YoqO family protein	-
J8G07_RS13225	-	2579866..2580102 (-)	237	WP_007407922.1	hypothetical protein	-
J8G07_RS13230	-	2580551..2580907 (+)	357	WP_032873513.1	DUF3221 domain-containing protein	-
J8G07_RS13235	-	2581095..2581267 (+)	173	Protein_2573	hypothetical protein	-
J8G07_RS13240	sprB	2581270..2581446 (+)	177	WP_007612049.1	recombination directionality factor SprB	-
J8G07_RS13245	-	2581480..2581905 (-)	426	WP_032873355.1	SDR family NAD(P)-dependent oxidoreductase	-

Sequence

Protein

• Length: 378 a.a.
• Molecular weight: 44658.20 Da
• Isoelectric Point: 4.7141

>NTDB_id=484402 J8G07_RS13210 WP_032873352.1 2577178..2578314(-) (rapF) [Bacillus amyloliquefaciens strain G10]
MEQLISSSKVGLKINEWYKYIRLFSVADAEILKEEVKQEIELMEEDQDLLLYYSLMCFRHQLMLDYLEPKTMNEERPEIS
DLSEEIESKQSDLKGILEYYFNFFHGMYEFEQYEYLKAISFYNRAEKKISIVPDEIERAEFHYKVAEVYYHMKQTHMSMH
HIVQAIETYKAHETYSIRVIQCSFVIGLNYLDMEYPEKAIPHFMNALKQAQEIDMPRLIGSSLYNLGLCSFTTGHMEKAL
EYFKEGVSIYQTNSLHNSSRLLDILLMLAKTHFKLSNTVDGKQVCEQGLMLSKDLNDDVLEKMFDFLMGLFVENDKERLF
KILDYLESKAMLSDVEDLATDAAMYYNVNEDHKVATAFYEKVLYARKQIQRGDCLYEI

Nucleotide

• Length: 1137 bp

>NTDB_id=484402 J8G07_RS13210 WP_032873352.1 2577178..2578314(-) (rapF) [Bacillus amyloliquefaciens strain G10]
TTGGAGCAATTGATCTCTTCTTCAAAAGTTGGCTTAAAAATCAATGAATGGTACAAATACATAAGGTTATTCAGTGTTGC
AGATGCAGAAATCTTGAAGGAAGAAGTGAAGCAAGAAATAGAGCTTATGGAAGAAGATCAAGATTTATTGTTGTACTATT
CGCTCATGTGTTTTCGACATCAATTAATGCTTGATTATCTTGAACCAAAAACCATGAATGAAGAACGACCTGAAATTTCA
GACTTATCAGAAGAGATCGAAAGTAAACAAAGCGATCTAAAAGGAATTCTTGAATATTATTTTAACTTTTTTCATGGGAT
GTATGAATTTGAACAGTACGAATATCTTAAAGCAATAAGTTTTTACAACCGAGCTGAAAAGAAGATATCTATTGTCCCCG
ATGAAATAGAGCGAGCTGAATTTCACTATAAAGTTGCTGAAGTGTACTATCACATGAAGCAAACCCACATGTCTATGCAT
CATATCGTTCAAGCAATAGAAACCTACAAAGCACACGAAACGTACTCAATAAGAGTAATCCAATGTTCATTCGTCATCGG
TCTGAATTATTTAGACATGGAGTATCCAGAAAAAGCAATACCGCATTTCATGAATGCATTAAAACAAGCACAAGAAATTG
ATATGCCACGGTTAATAGGTTCTTCTTTGTACAATCTCGGTTTATGCTCATTTACAACAGGACATATGGAGAAGGCATTG
GAGTATTTTAAAGAAGGCGTCTCAATTTATCAAACTAATTCTCTTCACAATTCTAGCCGACTGCTTGACATACTTTTAAT
GCTGGCAAAAACGCACTTTAAGTTGTCCAACACAGTTGATGGAAAACAAGTTTGTGAACAAGGTCTTATGCTGTCAAAGG
ATTTGAACGATGACGTATTAGAGAAAATGTTTGATTTTCTTATGGGTTTATTCGTTGAGAATGACAAAGAACGACTTTTT
AAAATCTTAGATTACTTAGAATCAAAAGCTATGCTTTCAGATGTGGAAGACCTAGCGACTGATGCAGCAATGTATTATAA
TGTAAATGAAGACCATAAAGTAGCTACAGCCTTTTATGAGAAAGTGCTTTATGCCCGAAAACAAATTCAGAGAGGGGATT
GTCTTTATGAAATTTAA

Domains

Predicted by InterProScan.

• Tetratricopeptide repeat (TPR_8) (222-252)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (5-65)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	45.932	100	0.463
rapC	Bacillus subtilis subsp. subtilis str. 168	45.503	100	0.455