Detailed information NTG0484345

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: J8G07_RS05885
• Genome accession: NZ_CP072612
• Coordinates: 1158116..1159246 (+)
• Length: 376 a.a.
• NCBI ID: WP_007407584.1
• Uniprot ID: A7Z9N9
• Organism: Bacillus amyloliquefaciens strain G10
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 1153116..1164246

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J8G07_RS05860	-	1154073..1154759 (+)	687	WP_007407590.1	VWA domain-containing protein	-
J8G07_RS05865	-	1155069..1155749 (+)	681	WP_012118657.1	VWA domain-containing protein	-
J8G07_RS05870	-	1155835..1155999 (+)	165	WP_003151191.1	hypothetical protein	-
J8G07_RS05875	fdhD	1156094..1156882 (+)	789	WP_032875955.1	formate dehydrogenase accessory sulfurtransferase FdhD	-
J8G07_RS05880	moaA	1156900..1157925 (+)	1026	WP_032875958.1	GTP 3',8-cyclase MoaA	-
J8G07_RS05885	rapC	1158116..1159246 (+)	1131	WP_007407584.1	tetratricopeptide repeat protein	Regulator
J8G07_RS05890	-	1159368..1159847 (+)	480	WP_012118654.1	hypothetical protein	-
J8G07_RS05895	-	1159922..1160110 (+)	189	WP_003151197.1	CsbD family protein	-
J8G07_RS05900	ureA	1160464..1160781 (+)	318	WP_007407581.1	urease subunit gamma	-
J8G07_RS05905	ureB	1160778..1161152 (+)	375	WP_003151199.1	urease subunit beta	-
J8G07_RS05910	ureC	1161149..1162858 (+)	1710	WP_032875961.1	urease subunit alpha	-
J8G07_RS05915	-	1163000..1163404 (+)	405	WP_032875964.1	Rrf2 family transcriptional regulator	-
J8G07_RS05920	-	1163450..1163626 (+)	177	WP_223204425.1	hypothetical protein	-

Sequence

Protein

• Length: 376 a.a.
• Molecular weight: 44934.03 Da
• Isoelectric Point: 5.3221

>NTDB_id=484345 J8G07_RS05885 WP_007407584.1 1158116..1159246(+) (rapC) [Bacillus amyloliquefaciens strain G10]
MTAYEIPSSQVGVKINKWYKHILAFQAADAIKLKEEIDEDIQRMEEDQLLLLYYQLISYRHHIMLDYVKPECTEQSQIQY
SELQKTIESTDSISGLSEYYFHLFRGMYEFDHNNYVAAISFYRKAEKLLSFVEDDIERAEFHFKMSEVFYVMKQTHFSMN
HGIQALDTYMKHDFYRVRRIQCHFVISGNYIDCKNYDKALEHLDEALRLSLLEGQPRLIGSSLYNLGNCYSEKRDLDEAA
RYFRKAVPVFEEHQLEQLPKALFSLTHTLFRLHDDQAALTYYERGVMIAKERGDRFSLEKYKFLQALYLESLNMDLIHEV
FDYMNEKSLYVYIEDFALEAAVYTSAHEQYKEAAYFYEKAIRMRENIQKEQCLYDI

Nucleotide

• Length: 1131 bp

>NTDB_id=484345 J8G07_RS05885 WP_007407584.1 1158116..1159246(+) (rapC) [Bacillus amyloliquefaciens strain G10]
ATGACCGCATACGAGATTCCGTCATCTCAAGTTGGAGTTAAGATCAACAAATGGTACAAGCACATTTTAGCGTTTCAAGC
GGCTGATGCCATAAAGCTGAAAGAGGAAATTGATGAGGATATACAACGTATGGAGGAAGACCAGCTGCTGCTGTTATATT
ATCAGCTGATCAGCTACCGCCATCATATTATGCTTGATTACGTCAAGCCGGAATGCACCGAACAATCACAGATTCAGTAC
AGCGAGCTGCAAAAGACGATCGAAAGCACGGACAGCATATCGGGACTGTCTGAGTATTATTTCCATTTGTTCAGAGGGAT
GTATGAATTCGATCACAATAACTATGTTGCGGCTATTTCTTTTTACCGGAAAGCGGAAAAACTCCTTTCATTTGTCGAGG
ATGATATAGAGAGGGCGGAATTCCATTTCAAGATGTCTGAAGTGTTTTATGTCATGAAGCAGACTCATTTTTCCATGAAT
CACGGGATTCAGGCGCTGGATACGTATATGAAACACGATTTCTACAGAGTGCGGAGAATTCAATGCCATTTCGTCATCTC
AGGAAACTACATCGACTGCAAAAACTACGACAAAGCGCTTGAGCATTTAGACGAAGCCCTCCGCCTTTCTTTGCTTGAAG
GACAGCCCCGCCTGATCGGGTCTTCGCTTTACAATCTGGGGAATTGTTATTCTGAAAAGCGCGATCTGGATGAAGCGGCC
CGGTACTTTAGAAAAGCGGTTCCCGTTTTTGAAGAGCATCAGCTTGAACAGCTTCCGAAGGCGCTGTTCAGCTTAACGCA
CACCCTTTTCAGGCTGCATGATGACCAAGCGGCCCTTACCTATTATGAAAGAGGGGTCATGATCGCGAAAGAACGGGGCG
ACCGATTCAGTTTAGAGAAGTATAAGTTTTTACAAGCGCTTTATTTGGAGTCACTCAATATGGATTTAATCCATGAAGTG
TTTGACTATATGAATGAAAAATCGCTGTATGTGTATATTGAAGATTTCGCCTTGGAGGCCGCCGTTTACACAAGCGCACA
TGAGCAATATAAAGAAGCGGCGTATTTTTATGAAAAAGCGATTCGCATGAGAGAAAACATTCAAAAAGAACAGTGTTTAT
ACGATATATAA

Domains

Predicted by InterProScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (6-66)

• Tetratricopeptide repeat (TPR_12) (192-251)

3D structure

• AlphaFold DB: A7Z9N9

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	41.842	100	0.423
rapF	Bacillus subtilis subsp. subtilis str. 168	40	99.734	0.399