Detailed information    

insolico Bioinformatically predicted

Overview

Name   subA/fin   Type   Machinery gene
Locus tag   J8G07_RS03445 Genome accession   NZ_CP072612
Coordinates   683638..683868 (-) Length   76 a.a.
NCBI ID   WP_004264650.1    Uniprot ID   A7Z0H7
Organism   Bacillus amyloliquefaciens strain G10     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 678638..688868
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J8G07_RS03435 spoVT 679362..679898 (-) 537 WP_004264646.1 stage V sporulation protein T -
  J8G07_RS03440 mfd 680035..683568 (-) 3534 WP_025650339.1 transcription-repair coupling factor -
  J8G07_RS03445 subA/fin 683638..683868 (-) 231 WP_004264650.1 anti-sigma-F factor Fin family protein Machinery gene
  J8G07_RS03450 pth 683930..684496 (-) 567 WP_004264652.1 aminoacyl-tRNA hydrolase -
  J8G07_RS03455 - 684581..685189 (-) 609 WP_032872190.1 50S ribosomal protein L25/general stress protein Ctc -
  J8G07_RS03460 - 685274..686227 (-) 954 WP_004264656.1 ribose-phosphate diphosphokinase -
  J8G07_RS03465 glmU 686249..687619 (-) 1371 WP_032872188.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  J8G07_RS03470 spoVG 687811..688104 (-) 294 WP_004264660.1 septation regulator SpoVG -
  J8G07_RS03475 ridA 688300..688680 (-) 381 WP_004264663.1 2-iminobutanoate/2-iminopropanoate deaminase -

Sequence

Protein


Download         Length: 76 a.a.        Molecular weight: 8899.87 Da        Isoelectric Point: 5.8002

>NTDB_id=484328 J8G07_RS03445 WP_004264650.1 683638..683868(-) (subA/fin) [Bacillus amyloliquefaciens strain G10]
MALHYFCRHCGFKVGSLEYSTVPTQSLGFQHLTNEERNDMISYKDNGDVHVLTICEDCQEALERNPHYHEHNTFIQ

Nucleotide


Download         Length: 231 bp        

>NTDB_id=484328 J8G07_RS03445 WP_004264650.1 683638..683868(-) (subA/fin) [Bacillus amyloliquefaciens strain G10]
ATGGCTTTGCATTATTTCTGCCGCCACTGCGGCTTTAAGGTAGGGAGCCTGGAATATTCGACGGTGCCGACACAGTCACT
TGGATTTCAGCACTTAACAAATGAGGAAAGAAACGATATGATTTCATATAAAGACAATGGAGATGTCCATGTTCTTACAA
TTTGTGAAGACTGCCAAGAGGCGCTGGAGCGCAATCCGCACTACCATGAACACAACACATTTATTCAATAA

Domains

Predicted by InterProScan.

Anti-sigma-F factor Fin (Fin)

(1-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z0H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  subA/fin Bacillus subtilis subsp. subtilis str. 168

86.842

100

0.868