Detailed information NTG0484328

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: ID168_RS17420
• Genome accession: NZ_CP061704
• Coordinates: 3544388..3545533 (+)
• Length: 381 a.a.
• NCBI ID: WP_094247421.1
• Uniprot ID: -
• Organism: Bacillus velezensis strain Y4_39
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 3539388..3550533

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ID168_RS17400 (ID168_17400)	-	3539862..3540578 (-)	717	WP_025853599.1	Crp/Fnr family transcriptional regulator	-
ID168_RS17405 (ID168_17405)	narK	3540676..3541866 (-)	1191	WP_025853600.1	nitrate transporter NarK	-
ID168_RS17410 (ID168_17410)	argS	3542001..3543671 (-)	1671	WP_094247422.1	arginine--tRNA ligase	-
ID168_RS17415 (ID168_17415)	-	3543668..3544096 (-)	429	WP_003151069.1	DUF1934 domain-containing protein	-
ID168_RS17420 (ID168_17420)	rapF	3544388..3545533 (+)	1146	WP_094247421.1	Rap family tetratricopeptide repeat protein	Regulator
ID168_RS17425 (ID168_17425)	-	3545517..3545636 (+)	120	WP_017418707.1	PhrC/PhrF family phosphatase-inhibitory pheromone	-
ID168_RS17430 (ID168_17430)	speB	3545759..3546196 (-)	438	Protein_3397	agmatinase	-
ID168_RS17435 (ID168_17435)	-	3546358..3547785 (-)	1428	WP_071543386.1	DUF885 family protein	-
ID168_RS17440 (ID168_17440)	-	3547786..3549126 (-)	1341	WP_094247420.1	MATE family efflux transporter	-
ID168_RS17445 (ID168_17445)	-	3549123..3550178 (-)	1056	WP_071543387.1	SagB/ThcOx family dehydrogenase	-

Sequence

Protein

• Length: 381 a.a.
• Molecular weight: 45782.29 Da
• Isoelectric Point: 5.0722

>NTDB_id=484328 ID168_RS17420 WP_094247421.1 3544388..3545533(+) (rapF) [Bacillus velezensis strain Y4_39]
MASVLSSSAVGEKINEWYMYIRRFSIPDAEYLRREIKEELAGLEDDQDLHLYYSLMEFRHNLMLEYLEPLESQRIEEQPR
LSELLADIDKKQARLTGRLDYYFNFFRGMYELECREYLSAIQFFKKAESKLTYVKDHIEKAEFYFKMSEVYYYMKQTYVS
MDYARQAYLIYKDEKKYNIRLTQCHSLFGANYLDVKQYDHAISHFQKAYTMAELEQQPQLMGRTLFNIALCHNNQNNKVE
AIPHLKEAIAVFEKAQMSHSLPQPYFLLTQIYFKLENIDNAYDYHKKGISICKEIDDIIYEEKFKFLEYLYMPDPRDTLI
NDCLHFLESKLMYADIEELALDVAKYYYTKEEYKKASVYFLKVEEARQQIEGGVNLYEIEV

Nucleotide

• Length: 1146 bp

>NTDB_id=484328 ID168_RS17420 WP_094247421.1 3544388..3545533(+) (rapF) [Bacillus velezensis strain Y4_39]
GTGGCGAGTGTTTTATCGTCTTCAGCGGTTGGAGAAAAAATCAACGAATGGTATATGTACATTCGAAGGTTCAGCATCCC
GGACGCCGAGTACTTGCGGAGAGAAATCAAAGAAGAACTTGCAGGTCTGGAAGATGATCAGGATCTTCATCTATACTATT
CTCTCATGGAATTCCGCCACAATCTGATGCTCGAATACCTCGAACCGCTGGAATCGCAGCGGATAGAAGAACAGCCGAGA
CTATCGGAGCTGCTCGCGGATATTGATAAAAAGCAGGCCCGGCTGACCGGACGGCTTGATTATTATTTTAATTTTTTCCG
GGGGATGTATGAGCTGGAATGCCGTGAATATCTTTCAGCGATTCAGTTTTTTAAGAAAGCTGAAAGCAAACTGACGTACG
TTAAAGATCATATAGAAAAAGCTGAATTTTACTTTAAAATGTCAGAAGTCTATTATTATATGAAACAAACTTATGTATCG
ATGGATTATGCGCGGCAGGCTTATTTAATTTATAAAGATGAAAAAAAATACAATATTAGATTAACCCAGTGCCATTCTTT
ATTTGGGGCTAATTATCTTGATGTAAAGCAATACGATCACGCGATTTCCCACTTTCAAAAGGCATATACGATGGCTGAAT
TGGAGCAGCAGCCGCAATTAATGGGGAGAACACTTTTTAACATCGCTTTATGCCATAATAATCAAAACAATAAAGTCGAG
GCTATTCCCCATTTAAAAGAAGCCATAGCTGTTTTTGAAAAAGCTCAAATGAGCCATTCACTTCCGCAGCCCTACTTCTT
ACTTACACAGATTTATTTTAAGTTAGAAAATATAGATAATGCGTACGATTATCATAAAAAAGGTATCTCAATATGTAAGG
AAATAGATGATATAATTTACGAGGAAAAATTTAAATTTTTGGAATATTTATATATGCCGGATCCAAGAGATACATTAATA
AACGATTGTCTGCATTTTCTTGAAAGTAAACTGATGTATGCTGATATTGAGGAATTAGCCCTTGATGTAGCTAAATATTA
TTACACAAAAGAAGAATATAAAAAAGCTTCTGTCTACTTTTTAAAAGTTGAAGAAGCCAGACAGCAGATCGAAGGAGGAG
TGAATTTATATGAAATTGAAGTATAA

Domains

Predicted by InterproScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (5-65)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	69.816	100	0.698
rapC	Bacillus subtilis subsp. subtilis str. 168	53.684	99.738	0.535