Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   ID168_RS12675 Genome accession   NZ_CP061704
Coordinates   2620144..2620896 (-) Length   250 a.a.
NCBI ID   WP_094247691.1    Uniprot ID   -
Organism   Bacillus velezensis strain Y4_39     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2615144..2625896
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ID168_RS12650 (ID168_12650) mreC 2615580..2616443 (-) 864 WP_003152649.1 rod shape-determining protein MreC -
  ID168_RS12655 (ID168_12655) mreB 2616474..2617487 (-) 1014 WP_003152647.1 cell shape-determining protein MreB -
  ID168_RS12660 (ID168_12660) radC 2617579..2618274 (-) 696 WP_007408165.1 DNA repair protein RadC -
  ID168_RS12665 (ID168_12665) - 2618306..2618875 (-) 570 WP_070082167.1 nucleoside triphosphate pyrophosphatase -
  ID168_RS12670 (ID168_12670) - 2619016..2620017 (-) 1002 WP_146277259.1 SPOR domain-containing protein -
  ID168_RS12675 (ID168_12675) comC 2620144..2620896 (-) 753 WP_094247691.1 A24 family peptidase Machinery gene
  ID168_RS12680 (ID168_12680) - 2621036..2622328 (-) 1293 WP_094247690.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  ID168_RS12685 (ID168_12685) - 2622387..2625029 (-) 2643 WP_094247689.1 valine--tRNA ligase -
  ID168_RS12690 (ID168_12690) - 2625482..2625673 (+) 192 WP_003152639.1 hypothetical protein -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 27030.62 Da        Isoelectric Point: 9.2521

>NTDB_id=484311 ID168_RS12675 WP_094247691.1 2620144..2620896(-) (comC) [Bacillus velezensis strain Y4_39]
MLFILFVLGLIFGSFFYTVACRIPLRISVISPRSSCSFCGLPLSWGELVPVVSYILQRGRCRNCRAKLSVMYPAAECWTA
CLFTAAGIHFGFSKELLTALLFLSLLMIVTVTDLQYMLIPDKVLLFFLPLFIAGRMFSPLDSWYAGFAGAVCGFALLVFI
MFVSKGGIGAGDVKLFGVIGLTLGVKLVLIAFFLSVMIGAVYGMCAAARGRLGKKQPFPFAPAISAGSALSYLYGDELFS
FYIKLASGGA

Nucleotide


Download         Length: 753 bp        

>NTDB_id=484311 ID168_RS12675 WP_094247691.1 2620144..2620896(-) (comC) [Bacillus velezensis strain Y4_39]
ATGCTTTTCATTCTGTTTGTTCTCGGTCTGATTTTCGGTTCTTTTTTTTATACAGTCGCATGCCGTATTCCGCTTCGAAT
CTCGGTTATTTCGCCGCGTTCATCCTGTTCGTTCTGCGGCTTGCCGCTCTCCTGGGGGGAGCTTGTGCCCGTTGTTTCCT
ATATCCTGCAAAGAGGAAGGTGCAGAAACTGCCGTGCGAAGCTGTCAGTGATGTATCCGGCAGCGGAATGCTGGACGGCA
TGTTTATTCACGGCTGCCGGTATCCATTTCGGTTTCTCAAAAGAGCTGCTAACCGCGCTGTTATTTCTGTCTCTGCTGAT
GATTGTTACTGTGACGGATCTGCAATATATGCTGATTCCTGACAAGGTTCTGCTGTTTTTTCTTCCGCTTTTCATCGCCG
GCCGTATGTTTTCTCCGCTGGATTCATGGTATGCGGGGTTTGCCGGAGCTGTTTGCGGATTTGCTCTGCTTGTTTTTATC
ATGTTTGTCAGTAAAGGAGGCATCGGCGCAGGTGATGTGAAACTGTTTGGGGTGATCGGCCTGACGCTCGGCGTGAAGCT
CGTGCTCATTGCATTCTTTCTTTCCGTTATGATCGGAGCCGTATACGGTATGTGCGCCGCAGCCCGGGGCAGGCTTGGTA
AAAAGCAGCCATTTCCGTTTGCGCCGGCCATCTCAGCCGGGAGCGCTTTGAGTTATTTATACGGTGATGAGCTGTTTTCG
TTTTACATCAAGCTCGCTTCAGGCGGAGCTTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)

Type IV leader peptidase family (Peptidase_A24)

(101-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

59.274

99.2

0.588