Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   ID168_RS11840 Genome accession   NZ_CP061704
Coordinates   2468400..2469167 (-) Length   255 a.a.
NCBI ID   WP_003152982.1    Uniprot ID   -
Organism   Bacillus velezensis strain Y4_39     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2463400..2474167
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ID168_RS11820 (ID168_11820) - 2463602..2464414 (-) 813 WP_003152991.1 pyruvate, water dikinase regulatory protein -
  ID168_RS11825 (ID168_11825) ccpN 2464440..2465078 (-) 639 WP_003152989.1 transcriptional regulator CcpN -
  ID168_RS11830 (ID168_11830) glyS 2465179..2467218 (-) 2040 WP_094247723.1 glycine--tRNA ligase subunit beta -
  ID168_RS11835 (ID168_11835) glyQ 2467211..2468098 (-) 888 WP_003152984.1 glycine--tRNA ligase subunit alpha -
  ID168_RS11840 (ID168_11840) recO 2468400..2469167 (-) 768 WP_003152982.1 DNA repair protein RecO Machinery gene
  ID168_RS11845 (ID168_11845) - 2469204..2469347 (-) 144 WP_007408286.1 YqzL family protein -
  ID168_RS11850 (ID168_11850) era 2469503..2470408 (-) 906 WP_007408285.1 GTPase Era -
  ID168_RS11855 (ID168_11855) - 2470389..2470799 (-) 411 WP_094247722.1 cytidine deaminase -
  ID168_RS11860 (ID168_11860) - 2470923..2471297 (-) 375 WP_003152974.1 diacylglycerol kinase family protein -
  ID168_RS11865 (ID168_11865) ybeY 2471278..2471751 (-) 474 WP_003152973.1 rRNA maturation RNase YbeY -
  ID168_RS11870 (ID168_11870) - 2471752..2473884 (-) 2133 WP_015387990.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29264.86 Da        Isoelectric Point: 8.3099

>NTDB_id=484304 ID168_RS11840 WP_003152982.1 2468400..2469167(-) (recO) [Bacillus velezensis strain Y4_39]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGARKSASRLSAVSQPFLYGSFLMQRTSGLGTLQQGEMILSMRT
IREDLFLTAYAAFIAELTDKGTEEKKPNPYLFELILESFKRLNDGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSGEG
TFHFSIRDNGFICHRCFEKDPYRVPISPQTARLLRLFYYFDIGRLGSVSLKQETKNEIKQVIDLYYEEYSGLYLKSKRFL
DQMESMKNLLDENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=484304 ID168_RS11840 WP_003152982.1 2468400..2469167(-) (recO) [Bacillus velezensis strain Y4_39]
ATGCTGACTAAATGTGAAGGAATCGTGCTCCGTACGAATGACTACGGGGAGACGAATAAAATCGTGACATTGCTGACGAG
GGAACACGGCAAAATCGGCGTCATGGCAAGGGGCGCCAGGAAGTCAGCCAGCCGGCTGTCAGCAGTCAGCCAGCCGTTTT
TGTACGGATCATTTTTAATGCAAAGAACATCCGGACTCGGCACGCTCCAGCAGGGTGAAATGATTCTCAGCATGAGAACG
ATCAGAGAAGATTTATTTTTGACGGCGTATGCCGCTTTTATCGCTGAACTCACTGACAAAGGAACGGAAGAGAAGAAACC
GAACCCCTATTTATTCGAATTGATTCTCGAATCCTTTAAGAGGCTGAATGACGGGACTGACCCGGACGTGATCACCTTCA
TCGTGCAGATGAAAATGCTCGGCGTCATGGGGCTGTATCCGGAGCTGAATCATTGTGTCCACTGCAAAAGCGGGGAAGGG
ACGTTTCATTTTTCGATAAGAGATAACGGTTTTATCTGCCACCGCTGCTTTGAAAAGGATCCGTACAGAGTTCCGATTTC
GCCGCAAACGGCTAGGCTGCTAAGGCTTTTTTATTACTTTGATATCGGAAGGCTCGGCAGCGTCTCGTTAAAACAGGAAA
CCAAAAACGAAATTAAACAGGTCATTGATCTGTATTACGAGGAATATTCAGGACTTTATTTAAAGTCAAAACGGTTTTTA
GACCAGATGGAAAGCATGAAGAACCTTTTGGATGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

89.412

100

0.894