Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   ID168_RS11335 Genome accession   NZ_CP061704
Coordinates   2383133..2383933 (-) Length   266 a.a.
NCBI ID   WP_003153177.1    Uniprot ID   I2C7K5
Organism   Bacillus velezensis strain Y4_39     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2378133..2388933
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ID168_RS11305 (ID168_11305) - 2378678..2379310 (+) 633 WP_014418348.1 helix-turn-helix domain-containing protein -
  ID168_RS11310 (ID168_11310) - 2379601..2379738 (+) 138 WP_014470646.1 hypothetical protein -
  ID168_RS11315 (ID168_11315) - 2379832..2380950 (+) 1119 WP_094247935.1 NADH-dependent flavin oxidoreductase -
  ID168_RS11320 (ID168_11320) - 2381077..2381289 (+) 213 WP_223883535.1 spore germination protein -
  ID168_RS11325 (ID168_11325) - 2381416..2381628 (+) 213 WP_003153181.1 spore germination protein -
  ID168_RS11330 (ID168_11330) alr 2381804..2382985 (+) 1182 WP_094247795.1 alanine racemase -
  ID168_RS11335 (ID168_11335) spo0A 2383133..2383933 (-) 801 WP_003153177.1 sporulation transcription factor Spo0A Regulator
  ID168_RS11340 (ID168_11340) spoIVB 2384214..2385494 (-) 1281 WP_007408360.1 SpoIVB peptidase -
  ID168_RS11345 (ID168_11345) recN 2385658..2387388 (-) 1731 WP_094247738.1 DNA repair protein RecN Machinery gene
  ID168_RS11350 (ID168_11350) ahrC 2387420..2387869 (-) 450 WP_003153173.1 transcriptional regulator AhrC/ArgR -
  ID168_RS11355 (ID168_11355) - 2387964..2388809 (-) 846 WP_003153172.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 29630.11 Da        Isoelectric Point: 6.1630

>NTDB_id=484294 ID168_RS11335 WP_003153177.1 2383133..2383933(-) (spo0A) [Bacillus velezensis strain Y4_39]
MEKIKVCVADDNRELVSLLSEYIEGQDDMEVIGVAYNGQECLSLFKDKNPDVLVLDIIMPHLDGLAVLERLRESELEKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNVSSVTHRAPSAQSSIIRSQPEPKRKNLDASITSII
HEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTVS
MTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 801 bp        

>NTDB_id=484294 ID168_RS11335 WP_003153177.1 2383133..2383933(-) (spo0A) [Bacillus velezensis strain Y4_39]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTTGTAAGCCTGTTGAGTGAATATATAGAGGGACAGGA
TGATATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGTCTTTCTTTGTTTAAAGATAAGAATCCCGATGTGCTCG
TGTTAGACATTATCATGCCGCATCTGGACGGACTTGCGGTTTTGGAGCGTCTGCGGGAATCAGAGCTCGAGAAGCAGCCG
AACGTCATCATGCTGACGGCATTCGGTCAGGAAGACGTTACGAAAAAAGCCGTCGATTTAGGCGCGTCCTATTTTATCCT
GAAGCCGTTTGATATGGAAAACCTTGTCGGCCATATCCGCCAGGTAAGCGGAAATGTCAGCAGTGTCACACACCGTGCGC
CGTCCGCGCAAAGCAGCATTATCCGCAGCCAGCCGGAGCCGAAACGGAAAAATCTCGATGCCAGCATTACAAGCATTATC
CATGAGATCGGTGTGCCTGCCCATATCAAAGGCTATCTTTATTTGCGTGAAGCCATTTCCATGGTGTATAACGATATTGA
ACTCCTCGGCAGCATCACAAAAGTCCTTTATCCCGACATTGCCAAAAAATTCAACACGACCGCAAGCCGTGTAGAACGGG
CCATCCGCCACGCCATTGAAGTCGCATGGAGCAGGGGAAATATTGATTCCATTTCTTCACTGTTCGGATATACCGTAAGC
ATGACAAAAGCAAAACCAACCAACTCAGAGTTCATCGCGATGGTTGCTGACAAGCTGAGATTGGAGCATAAAGCTTCGTA
A

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(156-259)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C7K5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

96.629

100

0.97