Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   ID168_RS08065 Genome accession   NZ_CP061704
Coordinates   1599617..1600516 (+) Length   299 a.a.
NCBI ID   WP_094246940.1    Uniprot ID   -
Organism   Bacillus velezensis strain Y4_39     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1594617..1605516
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ID168_RS08045 (ID168_08045) - 1595307..1597010 (+) 1704 WP_094246941.1 glycosyl transferase -
  ID168_RS08050 (ID168_08050) - 1597007..1597288 (+) 282 WP_007409769.1 FlhB-like flagellar biosynthesis protein -
  ID168_RS08055 (ID168_08055) sucC 1597463..1598620 (+) 1158 WP_003154283.1 ADP-forming succinate--CoA ligase subunit beta -
  ID168_RS08060 (ID168_08060) sucD 1598649..1599551 (+) 903 WP_003154281.1 succinate--CoA ligase subunit alpha -
  ID168_RS08065 (ID168_08065) dprA 1599617..1600516 (+) 900 WP_094246940.1 DNA-processing protein DprA Machinery gene
  ID168_RS08070 (ID168_08070) topA 1600698..1602773 (+) 2076 WP_025649465.1 type I DNA topoisomerase -
  ID168_RS08075 (ID168_08075) trmFO 1602838..1604145 (+) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  ID168_RS08080 (ID168_08080) xerC 1604215..1605132 (+) 918 WP_007409774.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 32878.95 Da        Isoelectric Point: 7.5073

>NTDB_id=484288 ID168_RS08065 WP_094246940.1 1599617..1600516(+) (dprA) [Bacillus velezensis strain Y4_39]
MDQASRCLMVCSINQIISPSLLLKWWKADHSLSFLPDPHPLTVLSEGKTAPEEIFREIERKDPELDEVLSDYRREGITVI
PISSSRYPTWLKAIYDPPAVLYAKGNTPLLEKGRKIGIVGTRKPTEDGIKAAGHLSAELSKKGWVIVSGLASGIDGLSHK
ASIRAKGLTIGVIAGGFHHIYPRENLLLAEYMAEHHLLLSEHPPETKPKKWHFPMRNRIISGLSEGIVVVQGKEKSGSLI
TAYQALDQGREVFAVPGSIFNPYSGGPIKLIQEGAKAVLCAEDIDGELTARCVQYTEPF

Nucleotide


Download         Length: 900 bp        

>NTDB_id=484288 ID168_RS08065 WP_094246940.1 1599617..1600516(+) (dprA) [Bacillus velezensis strain Y4_39]
TTGGATCAAGCATCGCGCTGTTTAATGGTCTGCAGTATTAATCAAATCATTTCCCCGTCTCTTCTATTAAAATGGTGGAA
AGCTGATCACTCTCTGTCTTTTTTACCGGATCCGCATCCATTAACTGTTTTATCAGAAGGGAAAACAGCCCCGGAAGAAA
TTTTTCGGGAAATAGAGCGCAAGGATCCGGAACTTGATGAAGTTCTGTCCGATTACCGCCGCGAAGGCATTACTGTCATT
CCGATTTCATCAAGCCGCTACCCAACATGGCTTAAAGCGATTTATGATCCGCCGGCTGTCTTGTATGCAAAAGGGAACAC
GCCGCTTCTTGAAAAAGGCAGAAAAATCGGGATTGTAGGAACGCGGAAACCGACGGAAGACGGAATAAAAGCGGCTGGGC
ATCTTTCCGCCGAACTCTCAAAAAAAGGCTGGGTCATTGTAAGCGGGCTTGCATCCGGTATAGACGGATTGTCTCATAAG
GCGAGCATCAGGGCAAAAGGGCTTACGATCGGCGTGATAGCCGGCGGATTCCATCACATCTATCCCCGGGAAAATCTCCT
GTTAGCAGAATACATGGCTGAACACCATCTCCTACTCTCAGAACATCCTCCTGAAACAAAGCCGAAAAAATGGCATTTTC
CGATGAGAAACCGCATAATCAGCGGACTAAGTGAAGGAATTGTGGTCGTGCAGGGAAAAGAAAAAAGCGGTTCATTAATC
ACAGCTTACCAGGCCCTCGATCAAGGCAGAGAGGTATTTGCCGTTCCGGGTTCCATATTTAATCCATATTCCGGAGGACC
TATAAAACTCATTCAAGAAGGGGCGAAAGCTGTATTATGCGCAGAGGATATTGACGGAGAGCTGACCGCCCGATGCGTTC
AGTATACGGAACCCTTTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(73-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

70.234

100

0.702
  dprA Lactococcus lactis subsp. cremoris KW2

41.288

88.294

0.365