Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   ID168_RS06990 Genome accession   NZ_CP061704
Coordinates   1345537..1346001 (-) Length   154 a.a.
NCBI ID   WP_003154622.1    Uniprot ID   A0A9Q3QIJ3
Organism   Bacillus velezensis strain Y4_39     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1340537..1351001
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ID168_RS06970 (ID168_06970) - 1341017..1342837 (+) 1821 WP_003154628.1 PAS domain-containing protein -
  ID168_RS06975 (ID168_06975) - 1342813..1344032 (-) 1220 Protein_1325 aminotransferase A -
  ID168_RS06980 (ID168_06980) - 1344233..1344394 (-) 162 WP_007409608.1 hypothetical protein -
  ID168_RS06985 (ID168_06985) cheV 1344583..1345494 (+) 912 WP_014304917.1 chemotaxis protein CheV -
  ID168_RS06990 (ID168_06990) kre 1345537..1346001 (-) 465 WP_003154622.1 YkyB family protein Regulator
  ID168_RS06995 (ID168_06995) - 1346124..1347416 (-) 1293 WP_024085236.1 MFS transporter -
  ID168_RS07000 (ID168_07000) - 1347492..1347986 (-) 495 WP_088037173.1 L,D-transpeptidase family protein -
  ID168_RS07005 (ID168_07005) - 1348061..1348924 (-) 864 WP_063174788.1 metallophosphoesterase -
  ID168_RS07010 (ID168_07010) fadH 1349068..1349832 (+) 765 WP_003154618.1 2,4-dienoyl-CoA reductase -
  ID168_RS07015 (ID168_07015) - 1349943..1350491 (+) 549 WP_094246985.1 hypothetical protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17784.55 Da        Isoelectric Point: 10.4864

>NTDB_id=484285 ID168_RS06990 WP_003154622.1 1345537..1346001(-) (kre) [Bacillus velezensis strain Y4_39]
MDDHAYSKELQPTIENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSNNPRFSQQQSDVLISIGD
YYFHMPPTKEDFQHLPHLGTLNQSYRNPKAQMSLTKAKNVLQKYVGLKEKPLAANRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=484285 ID168_RS06990 WP_003154622.1 1345537..1346001(-) (kre) [Bacillus velezensis strain Y4_39]
ATGGACGACCACGCTTATTCGAAAGAGCTGCAGCCAACCATCGAGAATCTTTCAAAAGCTGTTTATACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTTTATCTGCTGAAAAAACGGGCATTACAAAAGCTTGTGAAAGAAGGCAAAG
GGAAAAAAATAGGGCTTCACTTTTCAAATAATCCCAGGTTTAGCCAACAGCAGTCAGACGTACTTATCTCTATCGGAGAC
TACTATTTTCACATGCCTCCAACAAAAGAAGACTTCCAGCATCTTCCGCATTTAGGTACGTTAAATCAATCGTACCGCAA
TCCTAAAGCACAAATGTCTTTGACAAAAGCGAAAAACGTATTGCAAAAATATGTGGGCTTAAAGGAAAAACCGCTTGCCG
CCAACAGGCAGCAGCCCGCTTATCATAAACCCGTATTTAAAAAACTTGGTGAGAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(13-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

92.857

100

0.929