Detailed information NTG0484281

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: J8F85_RS16710
• Genome accession: NZ_CP072566
• Coordinates: 3459484..3460758 (-)
• Length: 424 a.a.
• NCBI ID: WP_099960453.1
• Uniprot ID: -
• Organism: Escherichia coli strain WG5::TT12A
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 3454484..3465758

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J8F85_RS16700 (J8F85_16570)	hupB	3456461..3456733 (-)	273	WP_001043542.1	nucleoid-associated protein HU-beta	-
J8F85_RS16705 (J8F85_16575)	lon	3456942..3459296 (-)	2355	WP_001295325.1	endopeptidase La	-
J8F85_RS16710 (J8F85_16580)	clpX	3459484..3460758 (-)	1275	WP_099960453.1	ATP-dependent protease ATP-binding subunit ClpX	Regulator
J8F85_RS16715 (J8F85_16585)	clpP	3460884..3461507 (-)	624	WP_000122253.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	Regulator
J8F85_RS16720 (J8F85_16590)	tig	3461753..3463051 (-)	1299	WP_001198386.1	trigger factor	-
J8F85_RS16725 (J8F85_16595)	bolA	3463395..3463712 (-)	318	WP_000973448.1	transcriptional regulator BolA	-
J8F85_RS16730 (J8F85_16600)	yajG	3464017..3464595 (+)	579	WP_001300776.1	lipoprotein	-

Sequence

Protein

• Length: 424 a.a.
• Molecular weight: 46370.04 Da
• Isoelectric Point: 4.9982

>NTDB_id=484281 J8F85_RS16710 WP_099960453.1 3459484..3460758(-) (clpX) [Escherichia coli strain WG5::TT12A]
MTDKRKDGSGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEVAPHRERSALPTPHEIRNHLDDYVIG
QEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVEN
IIQKLLQKCDYDVQKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDT
SKILFICGAAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIGRLPVVATLNELSEE
ALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDE
SVIDGQSKPLLIYGKPEAQQASGE

Nucleotide

• Length: 1275 bp

>NTDB_id=484281 J8F85_RS16710 WP_099960453.1 3459484..3460758(-) (clpX) [Escherichia coli strain WG5::TT12A]
ATGACAGATAAACGCAAAGATGGCTCAGGCAAATTGCTGTATTGCTCTTTTTGCGGCAAAAGCCAGCATGAAGTGCGCAA
GCTGATTGCCGGTCCATCCGTGTATATCTGCGACGAATGTGTTGATTTATGTAACGACATCATTCGCGAAGAGATTAAAG
AAGTTGCACCGCATCGTGAACGCAGTGCGCTACCGACGCCGCATGAAATTCGCAACCACCTGGACGATTACGTTATCGGC
CAGGAACAGGCGAAAAAAGTGCTGGCGGTCGCGGTATACAACCATTACAAACGTCTGCGCAACGGCGATACCAGCAATGG
CGTCGAGTTGGGCAAAAGTAACATTCTGCTGATCGGTCCGACCGGTTCCGGTAAAACGCTGCTGGCTGAAACGCTGGCGC
GCCTGCTGGATGTTCCGTTCACCATGGCCGACGCGACTACACTGACCGAAGCCGGTTATGTGGGTGAAGACGTTGAAAAC
ATCATTCAGAAGCTGTTGCAGAAATGCGACTACGATGTCCAGAAAGCACAGCGTGGTATTGTCTACATCGATGAAATCGA
CAAGATTTCTCGTAAGTCAGACAACCCGTCCATTACCCGAGACGTTTCCGGTGAAGGCGTACAGCAGGCACTGTTGAAAC
TGATCGAAGGTACGGTAGCTGCTGTTCCACCGCAAGGTGGGCGTAAACATCCGCAGCAGGAATTCTTGCAGGTTGATACC
TCTAAGATCCTGTTTATTTGTGGCGCTGCGTTTGCCGGTCTGGATAAAGTGATTTCCCACCGTGTAGAAACCGGCTCCGG
CATTGGTTTTGGCGCGACGGTAAAAGCGAAGTCCGACAAAGCAAGCGAAGGCGAGCTGCTGGCGCAGGTTGAACCGGAAG
ATCTGATCAAGTTTGGTCTTATCCCTGAGTTTATTGGTCGTCTGCCGGTTGTCGCAACGTTGAATGAACTGAGCGAAGAA
GCTCTGATTCAGATCCTCAAAGAGCCGAAAAACGCCCTGACCAAGCAGTATCAGGCGCTGTTTAATCTGGAAGGCGTGGA
TCTGGAATTCCGTGACGAGGCGCTGGATGCTATCGCTAAGAAAGCGATGGCGCGTAAAACCGGTGCCCGTGGCCTGCGTT
CCATCGTAGAAGCCGCACTGCTCGATACCATGTACGATCTGCCGTCCATGGAAGACGTCGAAAAAGTGGTTATCGACGAG
TCGGTAATTGATGGTCAAAGCAAACCGTTGCTGATTTATGGCAAGCCGGAAGCGCAACAGGCATCTGGTGAATAA

Domains

Predicted by InterProScan.

• ClpX C4-type zinc finger (zf-C4_ClpX) (13-50)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (317-395)

• AAA domain (Cdc48 subfamily) (AAA_2) (112-310)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	59.601	94.575	0.564
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	55.147	96.226	0.531