Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   ID168_RS01985 Genome accession   NZ_CP061704
Coordinates   390936..391889 (+) Length   317 a.a.
NCBI ID   WP_003156332.1    Uniprot ID   -
Organism   Bacillus velezensis strain Y4_39     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 385936..396889
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ID168_RS01960 (ID168_01960) - 385980..387413 (+) 1434 WP_161941456.1 HAMP domain-containing sensor histidine kinase -
  ID168_RS01965 (ID168_01965) rapC 387566..388714 (+) 1149 WP_003156336.1 Rap family tetratricopeptide repeat protein Regulator
  ID168_RS01970 (ID168_01970) phrC 388698..388817 (+) 120 WP_003156334.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  ID168_RS01975 (ID168_01975) - 388967..389077 (-) 111 WP_369719092.1 YjcZ family sporulation protein -
  ID168_RS01980 (ID168_01980) - 389157..390521 (-) 1365 WP_070081361.1 aspartate kinase -
  ID168_RS01985 (ID168_01985) ceuB 390936..391889 (+) 954 WP_003156332.1 ABC transporter permease Machinery gene
  ID168_RS01990 (ID168_01990) - 391879..392826 (+) 948 WP_014416905.1 iron chelate uptake ABC transporter family permease subunit -
  ID168_RS01995 (ID168_01995) - 392820..393578 (+) 759 WP_022552588.1 ABC transporter ATP-binding protein -
  ID168_RS02000 (ID168_02000) - 393600..394544 (+) 945 WP_003156329.1 siderophore ABC transporter substrate-binding protein -
  ID168_RS02005 (ID168_02005) - 394586..396010 (-) 1425 WP_063636989.1 MDR family MFS transporter -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34959.26 Da        Isoelectric Point: 9.6741

>NTDB_id=484267 ID168_RS01985 WP_003156332.1 390936..391889(+) (ceuB) [Bacillus velezensis strain Y4_39]
MKLRYLLLLLAVLACTSIFIGVEDLSPLDIFHLNKEQAGTLFDSRLPRLVSIIIAGMSLSICGLIMQQISRNKFVSPTTA
GTMDWARLGILISLMLFTSASPLVKMSIAFIFALAGNFLFMKILERIKFNDAIFIPLVGLMLGNIVSSIATFIAYKYDLI
QNLSSWLQGDFSLVVKGRYELLYLSIPLVIIAYVYADKFTVAGMGESFSVNLGLKYKRVVNIGLIIVSLIASLVILTVGM
LPFLGLIIPNMVSIYKGDNLRSSLPHTALLGAVFVLFCDILGRVIIFPYEISIGLMVGVIGSGIFLYMLLRRKAYES

Nucleotide


Download         Length: 954 bp        

>NTDB_id=484267 ID168_RS01985 WP_003156332.1 390936..391889(+) (ceuB) [Bacillus velezensis strain Y4_39]
ATGAAGCTACGTTACTTACTTTTGCTACTGGCGGTTTTGGCGTGTACTTCTATATTTATCGGTGTAGAAGATTTGTCGCC
GCTGGATATTTTTCATTTAAATAAAGAACAGGCAGGTACATTGTTTGACAGCCGGCTGCCGCGTTTGGTGAGCATTATCA
TCGCCGGCATGAGCCTGAGCATCTGCGGATTAATCATGCAGCAGATCAGCCGGAATAAATTTGTATCGCCGACGACTGCG
GGAACGATGGACTGGGCAAGGCTCGGAATTTTGATTTCATTAATGCTTTTTACGTCAGCGAGCCCGCTTGTGAAAATGTC
TATCGCTTTTATTTTCGCCTTGGCGGGAAATTTCCTTTTCATGAAAATCCTCGAGAGAATCAAGTTCAATGATGCGATTT
TTATTCCTCTCGTCGGTTTAATGCTTGGGAATATCGTCAGCTCAATCGCCACGTTTATCGCATATAAATACGACCTGATC
CAAAACCTGTCATCTTGGCTGCAGGGAGATTTCTCACTGGTCGTCAAAGGCCGGTATGAGCTTTTATATCTGAGTATCCC
GCTGGTGATCATCGCTTATGTCTATGCGGATAAATTTACGGTGGCGGGAATGGGAGAGAGCTTTTCCGTCAATCTCGGCC
TGAAATACAAACGCGTCGTCAATATCGGTCTGATTATCGTGTCGCTCATCGCTTCACTGGTGATCCTGACCGTCGGGATG
CTGCCGTTTCTCGGTTTGATCATTCCCAATATGGTGTCGATTTACAAAGGGGACAACCTGAGGAGCAGCCTGCCTCACAC
CGCTCTCTTGGGCGCTGTTTTTGTGCTGTTTTGCGACATTTTGGGAAGGGTGATCATCTTCCCGTACGAAATTTCCATCG
GCCTGATGGTCGGTGTTATCGGCAGCGGCATCTTCCTGTATATGCTGTTAAGGAGAAAAGCATATGAGTCATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

53.481

99.685

0.533