Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   ID168_RS01780 Genome accession   NZ_CP061704
Coordinates   328422..328859 (-) Length   145 a.a.
NCBI ID   WP_003156588.1    Uniprot ID   -
Organism   Bacillus velezensis strain Y4_39     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 323422..333859
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ID168_RS19175 - 324011..324175 (-) 165 WP_374107008.1 hypothetical protein -
  ID168_RS01745 (ID168_01745) - 324289..325491 (+) 1203 WP_043866820.1 GTP-binding protein -
  ID168_RS01750 (ID168_01750) - 325556..326692 (+) 1137 WP_077721769.1 zinc-dependent alcohol dehydrogenase -
  ID168_RS01755 (ID168_01755) - 326707..327141 (+) 435 WP_021494203.1 RDD family protein -
  ID168_RS01760 (ID168_01760) - 327259..327534 (+) 276 WP_369719109.1 YckD family protein -
  ID168_RS19435 (ID168_01765) - 327638..327829 (+) 192 WP_071392145.1 family 1 glycosylhydrolase -
  ID168_RS01770 (ID168_01770) - 327754..327983 (+) 230 Protein_310 family 1 glycosylhydrolase -
  ID168_RS01775 (ID168_01775) nin/comJ 328002..328400 (-) 399 WP_094247249.1 competence protein ComJ Regulator
  ID168_RS01780 (ID168_01780) nucA/comI 328422..328859 (-) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  ID168_RS01785 (ID168_01785) hxlB 329220..329777 (-) 558 WP_014304318.1 6-phospho-3-hexuloisomerase -
  ID168_RS01790 (ID168_01790) hxlA 329774..330409 (-) 636 WP_014304319.1 3-hexulose-6-phosphate synthase -
  ID168_RS01795 (ID168_01795) - 330641..331003 (+) 363 WP_014304320.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16072.35 Da        Isoelectric Point: 8.4850

>NTDB_id=484264 ID168_RS01780 WP_003156588.1 328422..328859(-) (nucA/comI) [Bacillus velezensis strain Y4_39]
MKTLKALLLVLIIIAGAVAALIKGDLFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=484264 ID168_RS01780 WP_003156588.1 328422..328859(-) (nucA/comI) [Bacillus velezensis strain Y4_39]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCAGATAACGAGCAGACCGTTCAGAAGAGTGATTACGACAAAGTAATCCTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGGCATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCTGTCAAAACGGGATACGATAGGGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAACAATGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCTTGGGTCGGACACCAGCTTACCAATG
ATCCCGACGGAACGAGAGTATTATTTAAAATCAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641