Detailed information NTG0484249

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: IFB02_RS06685
• Genome accession: NZ_CP061703
• Coordinates: 1470272..1471633 (+)
• Length: 453 a.a.
• NCBI ID: WP_106687512.1
• Uniprot ID: -
• Organism: Mesoflavibacter profundi strain YC1039
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1465272..1476633

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IFB02_RS06660	-	1465987..1466796 (-)	810	WP_106687516.1	glycogen/starch synthase	-
IFB02_RS06665	panC	1466905..1467753 (+)	849	WP_106687515.1	pantoate--beta-alanine ligase	-
IFB02_RS06670	panD	1467767..1468117 (+)	351	WP_027879612.1	aspartate 1-decarboxylase	-
IFB02_RS06675	-	1468154..1469074 (+)	921	WP_262891937.1	lysylphosphatidylglycerol synthase transmembrane domain-containing protein	-
IFB02_RS06680	-	1469109..1470254 (+)	1146	WP_191073154.1	alpha/beta hydrolase	-
IFB02_RS06685	radA	1470272..1471633 (+)	1362	WP_106687512.1	DNA repair protein RadA	Machinery gene

Sequence

Protein

• Length: 453 a.a.
• Molecular weight: 50028.38 Da
• Isoelectric Point: 6.9350

>NTDB_id=484249 IFB02_RS06685 WP_106687512.1 1470272..1471633(+) (radA) [Mesoflavibacter profundi strain YC1039]
MAKVKTTFFCQNCGTQFSKWQGQCTSCKEWNTIVEEVVQKPEKNDWKLPSSNTTKRVSKPLKLNQIDDSKEARLDTKDAE
FNRVLGGGIVPGSLTLLGGEPGIGKSTLLLQISLHLPYKTLYVSGEESQKQIKMRAQRIYPDNDSCYILTETKTQNIFKQ
IESVNPDIVIVDSIQTLHSDYVESSSGSISQIKECTTELIKFAKETNTPVIIIGHITKDGQIAGPKILEHMVDTVLQFEG
DRNHVFRILRANKNRFGSTNEIGIYEMQGSGLREVSNPSEILISKKDNDLSGNAVAATLEGMRPLMIEVQALVSTAVYGT
PQRSATGFNAKRLNMLLAVLEKRAGFRLGAKDVFLNITGGINVDDPAIDLAVVAAILSSNEDDALQTNFCFAAEVGLSGE
IRPVQRVEQRILEAEKLGFSTIFVSKFNKITIQPKGIKIQLISNIEDLVSILF

Nucleotide

• Length: 1362 bp

>NTDB_id=484249 IFB02_RS06685 WP_106687512.1 1470272..1471633(+) (radA) [Mesoflavibacter profundi strain YC1039]
ATGGCTAAAGTAAAAACAACATTTTTTTGTCAAAATTGCGGCACACAATTTTCTAAATGGCAAGGACAATGTACCTCTTG
CAAAGAGTGGAATACAATTGTAGAAGAAGTAGTCCAAAAACCAGAAAAAAACGACTGGAAATTACCATCTTCTAACACGA
CCAAAAGAGTTTCTAAGCCATTAAAGTTAAATCAAATAGACGACTCTAAAGAAGCTAGGCTAGATACTAAAGATGCAGAG
TTTAACCGTGTTCTTGGTGGCGGCATTGTGCCAGGATCACTAACCTTATTAGGCGGTGAACCAGGAATAGGTAAAAGTAC
ATTGCTACTACAAATATCTTTACACTTACCTTATAAAACTTTATATGTTTCTGGAGAAGAAAGTCAAAAGCAAATAAAGA
TGAGAGCGCAGCGTATCTATCCAGATAATGATAGCTGTTATATACTTACCGAAACAAAAACTCAAAATATTTTCAAACAA
ATAGAGTCTGTAAATCCAGATATTGTAATTGTAGATTCTATCCAAACCTTGCACAGCGATTATGTAGAGAGTTCTAGTGG
AAGTATTTCTCAAATTAAAGAATGCACAACAGAGCTTATAAAGTTTGCAAAAGAAACAAATACACCTGTAATCATAATTG
GTCATATTACTAAAGATGGTCAAATTGCAGGTCCTAAAATTTTAGAACATATGGTAGATACGGTTTTGCAATTTGAAGGA
GACCGTAACCATGTTTTTAGAATTTTAAGAGCCAATAAAAATAGATTTGGATCTACTAACGAAATTGGTATTTACGAAAT
GCAAGGTTCTGGATTGCGAGAAGTATCTAATCCAAGCGAAATACTAATATCTAAAAAAGATAACGATTTATCAGGTAATG
CTGTCGCGGCAACATTAGAAGGTATGCGTCCTTTAATGATAGAAGTACAAGCACTGGTAAGTACTGCAGTTTATGGTACA
CCACAAAGAAGCGCAACAGGATTTAATGCTAAACGTTTAAATATGCTTTTAGCTGTTTTAGAAAAAAGAGCTGGATTTAG
ATTAGGCGCAAAAGATGTATTTTTAAATATAACTGGTGGTATTAATGTAGACGATCCAGCAATAGATTTAGCTGTGGTTG
CTGCAATTCTGTCTTCCAATGAAGACGATGCACTACAAACCAATTTTTGTTTTGCTGCCGAAGTAGGTTTATCTGGAGAA
ATTAGACCTGTACAACGTGTTGAGCAAAGAATTCTTGAAGCTGAAAAGCTAGGATTTTCAACAATATTTGTTTCAAAATT
TAATAAAATTACTATTCAACCTAAAGGAATTAAAATTCAATTAATTTCTAATATAGAAGATCTTGTTTCTATCTTATTTT
AA

Domains

Predicted by InterproScan.

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (9-35)

• AAA domain (AAA_25) (67-221)

• Subunit ChlI of Mg-chelatase (ChlI) (328-427)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Bacillus subtilis subsp. subtilis str. 168	49.667	99.558	0.494
radA	Streptococcus pneumoniae Rx1	48.796	100	0.492
radA	Streptococcus pneumoniae D39	48.796	100	0.492
radA	Streptococcus pneumoniae R6	48.796	100	0.492
radA	Streptococcus pneumoniae TIGR4	48.796	100	0.492
radA	Streptococcus mitis NCTC 12261	48.796	100	0.492
radA	Streptococcus mitis SK321	48.796	100	0.492