Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilZ   Type   Machinery gene
Locus tag   AVCA6_RS06820 Genome accession   NC_021150
Coordinates   1478025..1478381 (+) Length   118 a.a.
NCBI ID   WP_012700131.1    Uniprot ID   C1DRH6
Organism   Azotobacter vinelandii CA6     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1473025..1483381
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AVCA6_RS06795 (AvCA6_14940) fabF 1473237..1474481 (+) 1245 WP_041807055.1 beta-ketoacyl-ACP synthase II -
  AVCA6_RS06800 (AvCA6_14950) pabC 1474481..1475296 (+) 816 WP_012700127.1 aminodeoxychorismate lyase -
  AVCA6_RS06805 (AvCA6_14960) mltG 1475303..1476379 (+) 1077 WP_012700128.1 endolytic transglycosylase MltG -
  AVCA6_RS06810 (AvCA6_14970) tmk 1476376..1477011 (+) 636 WP_012700129.1 dTMP kinase -
  AVCA6_RS06815 (AvCA6_14980) - 1477004..1477990 (+) 987 WP_012700130.1 DNA polymerase III subunit delta' -
  AVCA6_RS06820 (AvCA6_14990) pilZ 1478025..1478381 (+) 357 WP_012700131.1 PilZ domain-containing protein Machinery gene
  AVCA6_RS06825 (AvCA6_15000) - 1478387..1479172 (+) 786 WP_012700132.1 TatD family hydrolase -
  AVCA6_RS06840 (AvCA6_15030) - 1480349..1481482 (-) 1134 WP_012700134.1 aminotransferase class V-fold PLP-dependent enzyme -
  AVCA6_RS06845 (AvCA6_15040) - 1481569..1482135 (+) 567 WP_012700135.1 DUF1285 domain-containing protein -

Sequence

Protein


Download         Length: 118 a.a.        Molecular weight: 12648.61 Da        Isoelectric Point: 7.1625

>NTDB_id=48424 AVCA6_RS06820 WP_012700131.1 1478025..1478381(+) (pilZ) [Azotobacter vinelandii CA6]
MSLPSGPGSCNGILPLSIKDKSVLYSSYMPFLKNGGLFIPTGKSYRLGDEIFLLLSLMDEPEKIPVAGKVVWVTPPGAQD
NRAAGIGVQFGDGDKLARDRIETYLAGALKSDHPTHTM

Nucleotide


Download         Length: 357 bp        

>NTDB_id=48424 AVCA6_RS06820 WP_012700131.1 1478025..1478381(+) (pilZ) [Azotobacter vinelandii CA6]
ATGAGCCTGCCATCCGGTCCGGGATCGTGTAACGGCATCCTGCCCTTGTCGATCAAGGACAAGTCGGTCCTTTACAGCTC
CTACATGCCCTTTCTCAAGAATGGCGGCCTGTTCATCCCTACCGGCAAGAGCTACAGGCTCGGCGACGAAATCTTCCTGC
TGCTCAGCCTGATGGACGAACCGGAGAAGATCCCGGTCGCCGGCAAGGTCGTCTGGGTCACCCCGCCCGGTGCTCAGGAC
AACCGTGCCGCCGGGATCGGCGTGCAGTTCGGCGACGGCGACAAGCTGGCCCGCGACAGGATTGAAACCTACCTGGCCGG
CGCCCTGAAGTCGGACCACCCAACCCATACGATGTGA

Domains

Predicted by InterProScan.

PilZ domain (PilZ)

(17-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C1DRH6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilZ Legionella pneumophila str. Paris

45.794

90.678

0.415
  pilZ Legionella pneumophila strain ERS1305867

45.794

90.678

0.415